MmuEX6078727 @ mm9
Exon Skipping
Gene
ENSMUSG00000024164 | C3
Description
complement component 3 [Source:MGI Symbol;Acc:MGI:88227]
Coordinates
chr17:57360396-57361441:-
Coord C1 exon
chr17:57361312-57361441
Coord A exon
chr17:57360746-57360817
Coord C2 exon
chr17:57360396-57360596
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTCTCTCCCCCTCAGATC
3' ss Score
12.98
5' ss Seq
AAGGTTAGG
5' ss Score
6.06
Exon sequences
Seq C1 exon
ATCTGGGATGTGGTAGAGAAGGCAGACATTGGCTGCACCCCAGGCAGTGGGAAGAACTATGCTGGTGTCTTCATGGATGCAGGCCTGGCCTTCAAGACAAGCCAAGGACTGCAGACTGAACAGAGAGCAG
Seq A exon
ATCTTGAGTGCACCAAGCCAGCAGCCCGCCGCCGTCGCTCAGTACAGTTGATGGAAAGAAGGATGGACAAAG
Seq C2 exon
CTGGTCAGTACACTGACAAGGGTCTTCGGAAGTGTTGTGAGGATGGTATGCGGGATATCCCTATGAGATACAGCTGCCAGCGCCGGGCACGCCTCATCACCCAGGGCGAGAACTGCATAAAGGCCTTCATAGACTGCTGCAACCACATCACCAAGCTGCGTGAACAACACAGAAGAGACCACGTGCTGGGCCTGGCCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024164-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.520 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0182113=ANATO=WD(100=52.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTTCAAGACAAGCCAAG
R:
AGGCCTTTATGCAGTTCTCGC
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: