BtaEX6038675 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017280 | C3
Description
Bos taurus complement component 3 (C3), mRNA. [Source:RefSeq mRNA;Acc:NM_001040469]
Coordinates
chr7:18999105-19001030:+
Coord C1 exon
chr7:18999105-18999234
Coord A exon
chr7:19000593-19000664
Coord C2 exon
chr7:19000833-19001030
Length
72 bp
Sequences
Splice sites
3' ss Seq
CCCCTTCCACCTGCCTTTAGATC
3' ss Score
10.77
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
ATCTGGGACGTGGTGGAGAAAGCGGACATTGGCTGCACCCCAGGCAGTGGAAGAAACTATGCTGGCGTCTTCACGGATGCAGGACTCACTCTCAAGACCAGCCAGGGCCTGGAGACCCAGCAGAGGGCAG
Seq A exon
ATCCGCAGTGCCCGCAACCAGCCACCCGCCGACGCCGCTCGGTGCAGCTCATGGAGAAGAGGATGGATAAAG
Seq C2 exon
CGGGTCAGTACAGCAGCGATCTGCGCAAGTGCTGCGAAGACGGCATGCGGGACAACCCCATGAAGTTCCCGTGCCAGCGCCGGGCCCAGTTCATCCTGCAGGGCGACGCGTGCGTCAAGGCCTTCCTGGACTGCTGCGAGTACATCACTCAGCTGCGGCAGCAGCACAGCCGCGACGGCGCCCTGGAGCTGGCCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017280-'18-21,'18-18,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.800 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0182113=ANATO=WD(100=53.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCACTCTCAAGACCAGCCA
R:
CAGTCCAGGAAGGCCTTGAC
Band lengths:
180-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]