DreEX0017794 @ danRer10
Exon Skipping
Gene
ENSDARG00000021004 | c5
Description
complement component 5 [Source:ZFIN;Acc:ZDB-GENE-120510-2]
Coordinates
chr5:62775067-62782221:-
Coord C1 exon
chr5:62782009-62782221
Coord A exon
chr5:62780077-62780161
Coord C2 exon
chr5:62775067-62775165
Length
85 bp
Sequences
Splice sites
3' ss Seq
AACTCACTGTTGCTTTACAGGCA
3' ss Score
8.46
5' ss Seq
CTGGTAAAC
5' ss Score
4.14
Exon sequences
Seq C1 exon
GTGAAGTACTGGGAGATATTCTGTCAATACTGAATAACCCAGAAGGTATAAAAATGCTGACCAATCTGCCAAGGGGAAGCGCCGAGCTGGAGCTCATGAGTCTCCTGCCAGTCTACTATGTCTATCACTACCTTGACAAGACGGAGAAATGGAACATTTTGGGGAAAGAGGCGGCCGCGAGTGAAAAGGAACTGAAGAGAAAGATGCAAGCTG
Seq A exon
GCATCACCAGCATCATGTCATTTCAGCTGAAGAATGGAGAAGCCTTCAGCATGTGGGCACAAAAGGACAAAACCCCCAGCACCTG
Seq C2 exon
GGTGCCGGAGTAGGTGTCACTGAAAAGTCAGTTTACCTCACGTCTTATGTCATGATCGGGATTAAAAATGCTCTGAAAATTCCAAACCTTAAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021004_MULTIEX1-4/19=3-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PU(0.4=1.4)
A:
PF076789=A2M_comp=FE(10.8=100)
C2:
PF076789=A2M_comp=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAATCTGCCAAGGGGAAG
R:
TTCAGTGACACCTACTCCGGC
Band lengths:
179-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]