HsaEX6062816 @ hg19
Exon Skipping
Gene
ENSG00000106804 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:1331]
Coordinates
chr9:123744933-123752058:-
Coord C1 exon
chr9:123751846-123752058
Coord A exon
chr9:123751324-123751399
Coord C2 exon
chr9:123744933-123745092
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTTGTGCTTCTTAGGGA
3' ss Score
9.99
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GACTGCTTGTAGGTGAGATCTTGTCTGCAGTTCTAAGTCAGGAAGGCATCAATATCCTAACCCACCTCCCCAAAGGGAGTGCAGAGGCGGAGCTGATGAGCGTTGTCCCAGTATTCTATGTTTTTCACTACCTGGAAACAGGAAATCATTGGAACATTTTTCATTCTGACCCATTAATTGAAAAGCAGAAACTGAAGAAAAAATTAAAAGAAG
Seq A exon
GGATGTTGAGCATTATGTCCTACAGAAATGCTGACTACTCTTACAGTGTGTGGAAGGGTGGAAGTGCTAGCACTTG
Seq C2 exon
GTTAACAGCTTTTGCTTTAAGAGTACTTGGACAAGTAAATAAATACGTAGAGCAGAACCAAAATTCAATTTGTAATTCTTTATTGTGGCTAGTTGAGAATTATCAATTAGATAATGGATCTTTCAAGGAAAATTCACAGTATCAACCAATAAAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804-'31-33,'31-32,32-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PU(0.4=1.4)
A:
PF076789=A2M_comp=FE(22.5=100)
C2:
PF076789=A2M_comp=FE(21.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGGAGTGCAGAGGCG
R:
CCAAGTACTCTTAAAGCAAAAGCTGT
Band lengths:
173-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)