GgaEX0001799 @ galGal4
Exon Skipping
Gene
ENSGALG00000001565 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr17:8327074-8328012:-
Coord C1 exon
chr17:8327731-8328012
Coord A exon
chr17:8327577-8327652
Coord C2 exon
chr17:8327074-8327233
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTGCCTAATATACCCCTTAGGAA
3' ss Score
6.4
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GACATCTTATGGGTGAAGTAATTGCCACAATCCTCAGTCCTGAAGGTCTTAGTATTCTTACGAATCTGCCGAAGGGCAGTGCAGAGGCAGAGCTCATGACTATTGCCCCAGTATTTTATGTGTTTCACTACTTGGAAGCATCGAACAACTGGCATATACTGGGTCCTGAAACCTTAACTTCAAGAACTGCAATGAGAAGGAAGATGAAAGAAGGTAGAAAAATATAACTTCTTCTCTTGCTTCAGAATTCTAGATCTTCATCAACTTTGCTGAATAAGAAAG
Seq A exon
GAATTGTAAGCGTCTTGTCATTCAGAAATTCTGACTTCTCATACAGCATGTGGAAAAATGGGAAAGCTAGCACATG
Seq C2 exon
GTTGACAGCTTTTGCTTTAAGGATTCTTGGACAAGTTAATCAATATATAAATCTTGATCAAATTTCTGTTTGTAATTCACTTCTGTGGTTGATTGATAACTGCCAAATGCCAGATGGGTCATTCAGTGAATTTTCAGATTATCAACCAGTGAAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565-'27-34,'27-33,28-34
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PU(0.4=1.4)
A:
PF076789=A2M_comp=FE(9.9=100)
C2:
PF076789=A2M_comp=FE(21.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGCATCGAACAACTGGCA
R:
TCCTTAAAGCAAAAGCTGTCAAC
Band lengths:
172-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]