RnoEX0015729 @ rn6
Exon Skipping
Gene
ENSRNOG00000018899 | C5
Description
complement C5 [Source:RGD Symbol;Acc:2237]
Coordinates
chr3:14080172-14084105:-
Coord C1 exon
chr3:14083893-14084105
Coord A exon
chr3:14083419-14083494
Coord C2 exon
chr3:14080172-14080331
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCTGGTTCCTCTTAGGGC
3' ss Score
9.89
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GACTGCTTATAGGGGAATTCTTGTCCACGGTTCTGAGTAAAGAAGGCATCGACATCCTAACCCACCTCCCCAAGGGCAGCGCCGAGGCAGAACTCATGAGCATAGTCCCGGTGTTCTACGTTTTCCACTACCTGGAAGCAGGAAACCATTGGAATATTTTCCACCCTGATACGTTAGCTAGAAAACAGAGCCTGCAGAAAAAAATAAAAGAAG
Seq A exon
GGCTGGTGAGCGTCATGTCCTACAGAAACGCTGACTATTCCTACAGCATGTGGAAGGGAGCAAGCTCTAGTGCCTG
Seq C2 exon
GCTGACAGCTTTTGCTCTGAGAGTGCTTGGACAGGTGAACAAGTATGTGAAACAAGACCAATACTCGATCTGTAACTCCTTGTTATGGCTGATTGAGAAGTGTCAGCTGGAAAACGGATCTTTCAAGGAAAATTCCCAATATCTACCAATAAAATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018899-'35-41,'35-40,36-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=PU(0.4=1.4)
A:
PF076789=A2M_comp=FE(9.9=100)
C2:
PF076789=A2M_comp=FE(21.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGCAGAACTCATGAGCAT
R:
TCACCTGTCCAAGCACTCTCA
Band lengths:
169-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]