DreEX0018705 @ danRer10
Exon Skipping
Gene
ENSDARG00000019208 | camsap1a
Description
calmodulin regulated spectrin-associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-060518-4]
Coordinates
chr21:4568091-4576291:-
Coord C1 exon
chr21:4576211-4576291
Coord A exon
chr21:4573707-4573766
Coord C2 exon
chr21:4568091-4568232
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTCTGTCTGTCTCAGCCC
3' ss Score
9.34
5' ss Seq
GTGGTACAG
5' ss Score
1.34
Exon sequences
Seq C1 exon
GTGGTTTTGAAGACGAGAGATCTCTCTGAGAAGGAGCTCAAGGTGAAACAGCCATTGATGGATTCGCCGTGCCATCAGAAG
Seq A exon
CCCGATCTCATGAACGCTTTGGCCCATTGCATGCTGGAGCCTGTGGAGTTTTCACGTGTG
Seq C2 exon
GTACGTTACCGCAGAGAACACATGTCAGGCCATCCTGTCCCACACCTGGCTGTGATGGAGGATCTGATGAAGGATATTTGTGATGGAGCGGCTCTGCTAGCGGTCATTCACTTCTACTGCCCTGAATACATGAGGCTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019208_MULTIEX1-3/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(16.6=100)
A:
PF0030726=CH=FE(12.0=100)
C2:
PF0030726=CH=FE(29.9=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCAAGGTGAAACAGCCA
R:
CAGAGCCGCTCCATCACAAAT
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]