DreEX0018704 @ danRer10
Exon Skipping
Gene
ENSDARG00000019208 | camsap1a
Description
calmodulin regulated spectrin-associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-060518-4]
Coordinates
chr21:4568091-4576291:-
Coord C1 exon
chr21:4576211-4576291
Coord A exon
chr21:4573926-4573958
Coord C2 exon
chr21:4568091-4568232
Length
33 bp
Sequences
Splice sites
3' ss Seq
CGCCCATTCCTGTTGGATAGTCT
3' ss Score
4.73
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTGGTTTTGAAGACGAGAGATCTCTCTGAGAAGGAGCTCAAGGTGAAACAGCCATTGATGGATTCGCCGTGCCATCAGAAG
Seq A exon
TCTCCCTCAAAATGGTATTGGAAGCTGGTGCCT
Seq C2 exon
GTACGTTACCGCAGAGAACACATGTCAGGCCATCCTGTCCCACACCTGGCTGTGATGGAGGATCTGATGAAGGATATTTGTGATGGAGCGGCTCTGCTAGCGGTCATTCACTTCTACTGCCCTGAATACATGAGGCTTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019208_MULTIEX1-2/3=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(16.6=100)
A:
PF0030726=CH=FE(6.4=100)
C2:
PF0030726=CH=FE(29.9=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCAAGGTGAAACAGCCA
R:
AGATCCTCCATCACAGCCAGG
Band lengths:
113-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]