BtaEX0006952 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006008 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr11:103465389-103468600:-
Coord C1 exon
chr11:103468520-103468600
Coord A exon
chr11:103467621-103467653
Coord C2 exon
chr11:103465389-103465530
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCGCCTCCTGAGCAGTCT
3' ss Score
4.66
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GTAAATCTTAAAATGCGAGAGATAACAGAGAAAGAAGTTAAGTTAAAACAGCAGTTATTGGAAAGCCCAGCTCATCAAAAG
Seq A exon
TCTCCCTCCAAGTGGTACTGGAAGTTAGTGCCC
Seq C2 exon
GTGCGCTACCGCCGGGAGCAGCTGTGCGCGCGGCAGCCGCCGCACTTCCCGCTGCTGGAGGACCTGATGCGGGACGGCAGCCACGGGGCGGCGCTCCTGGCCGTGGTGCACTACTACTGCCCGGGGCAGCTGAAGCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006008_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(17.8=100)
A:
PF0030726=CH=FE(6.4=100)
C2:
PF0030726=CH=FE(32.2=100)
Main Inclusion Isoform:
ENSBTAT00000007892fB1330
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGCAGTTATTGGAAAGCCC
R:
CGTCCCGCATCAGGTCCTC
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development