BtaINT0031082 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006008 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr11:103465389-103468600:-
Coord C1 exon
chr11:103468520-103468600
Coord A exon
chr11:103465531-103468519
Coord C2 exon
chr11:103465389-103465530
Length
2989 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CAGGCCCCTCTCACCCGCAGGTG
3' ss Score
10.55
Exon sequences
Seq C1 exon
GTAAATCTTAAAATGCGAGAGATAACAGAGAAAGAAGTTAAGTTAAAACAGCAGTTATTGGAAAGCCCAGCTCATCAAAAG
Seq A exon
GTAAAGGGTAAATTTCACTTCTGGGGGACGCTCCGTCGCCGTGGCTCCTGGTCGCAGAGAATCGCGTCCGTGTGGGCTCCCTGCGTGTTCTTCGGTTTCACTTGCCAGGCGGGGAGTGGGTGCCCTGGGGCCCTGCCCTGGTGGCGGGGGCCTGGCAGCACGCTGCCCTTTCTTCCAGGCAGGCGTGGCCTAGTATTGAACTTGAACTTGGGAGGGTGGGGGAGTGGAGGGAGGGCATAAGGGTCACCCGAGGGGAGTCAGCACAGGAGGGGATGTTCCTGGCAGCCAGTAGTCCCCTCGGGGCCCTCGTGGGCCACATGTCCAGTGTGGGCTTTAGGAGGGCGAAGGTCCCATGTCTAGTGAAACGACACGCTTCCTCCTGTTTCTCCCTTTTTGGGGATGGGGGTGCCGAGTGTGTGTGTGACTGAATCCACGTTCCTCCGCCTGTGCACACCGTGGCGGCCGAGGCTGTGGTCCCAGGGCTGCAGGTCGAGGGAGCCTCCTTTTACTCCATCCTGGGCCCTGGGATGCTGTCCGTGGGTCTCTCACCCCGGCCACGCTGCCGTGAACCCCCCTCCTCAGACGGGCGCAGACAGCTTGCCGAGGCCCTTTCTGAGCGGGCTTGCGCCTGTCCTCTGAGGGCCCAGCCCGCACGCCTCCAGCTGCCGGCGTCGCGGTGGTGCCCATGGGGTCCCTGGGTCCCTGCCAGTGCAGAGCGTCCCGGGCCGCGTGCACTGGGCACGTCTTGCCTCTCGGAGGCGGAGCACCTCCCGTGTGAACGTGGCGTGTTGCGTGTGTCTCGTCCGTCCTCAACGGACCTGCCTGCTGACTCCTCTCCTGCCTTCCTTCCCTCGCCTCCTGAGCAGTCTCCCTCCAAGTGGTACTGGAAGTTAGTGCCCGTAAGTGGACCCCGCGCGCACCCGGCCGCCATCAGACGGCTGTTCGCCGCCATCACTTGCTTCCATTTCAAACCGCTCCCGCCTGTGTCTCTGTCTGAGTGTCCTCCCTGGTGGTTTGTTGCACTTCCCGCGGGGCAGGGCTGGCCCGCTCTGGGCAGAGTGGACCGTGGTGCGGCCCTCTCAGCTCCAGGGAGGCCTTCTGTAGCTGCCACCGAGAGCGTGGTTTGCCCACTTTCTTAGGTAAACTTAACAGACAGCTTCGTGTTTCTCCTTTGAAGAGGTAGTTTCCTGCTTTATGTGATGAACTTCAGGGTCATTGACAGGATCCATTCCCTTCCTTATAGATTTTAGCAGGAGTGGCCCGTGGCATGCTCTGCCGAGCGGCCCTCGGCTTGCTCTTCCTGGTGGCGAGGTCCACCGGCGAAGGTTCTGGAAATGGACCCAGTTTGTTGCACCGTTTCCCACGACAGATACTTGGCGCTGCAAGTGGTGCCTTAAAATGAAGTTCCGGAGGACGGACCTTTTCGAAGCTCCCTTACTTTTGCCTGTCCCTTTAGTTTAATTGTTTGGATCAAATGGTCCTTAGGATTCGATTATAAAGGAGATATGGTGGATATAAACTGTCAGTGGGATCTGCATGAACAGTGAAAGAGTCTGCTTTGTGGCTGATGGATAATTTCCCTTCTTTGAAATGTAATAATCACAAAGAGGGGGAAGGCCTTTTTTTTTTGAGTGTTTATATATTTCTTAACTTGTTGAAAAGCAAAGGCCAGAGTCAAACTGTGAAAGCAGGTCCAAGGCGTAGTGAGGACCGTCAGGCATGCAGGTCCCCCGGAAGGAGGGCGTCAGGCGGGACGAGGGCCTCGAGCCTCGGGGTCTCAGGGTCGTCGGTCCCCTCGGCTACCTGAGCGCGCAGCCTACTTGTCGGCAGCGGGCTGAGTGTGGGCGGGCCCGGGGCTGGGAGTGGGGCCCCCTCGAGGGGCGGTCGCTGCTCCCGGACCCAGGGGTCAGCGCTTTCCCCAACGCAGACGCACACCATCTGTCCTCAGAAACCATCCGCTTTCCTGCATGCTGTGCTCTGCCGTGTGCTGTGTGTGTGCGTGTGCGTGTGGAGGCTGGTCGGGTGCGTGCCTTGGGCTGCACGCGGGAACCCCTGGGCCTGGCCCCGGGCGGGAGCCTGCACCAGGCCGAGAAACAAGTTAAAAGTCCCCGTGGAGACTGGTGGGAGTGGTGTGCATTGCACGGGCCCAGGTGGGGCGTATTCTGTGCACACGTCGCTGCCGGAGGCTTTTCCTTGGGTTGATTGACTCTCCCACGCGGCTCCCAGAAACCCGCCGTGAGCAGCACGGGCTTTGTCCCTTGAGCTGGCACTGTGCTCTTCTACCCTGGGGAGAGCGTGGCTGCAGAAATGCCAGGCTTACCGGCAGGACGTGGTCACCCGGCGGGCGGCCTGCGTGGCCACGCTCCGAGCGAGGCCCAGTTACAGGGCGGCACGTGCAGGCGGGGAGGCTCCGCTCTGAGCACTTGTTTCCTGTCGGTAAAGACAGCGGCACAGAAACCTTGGGAAAGCGCTTATGTTCTTATAGCGCTTCACGTGCCGTCAGATTCCCGGCTGCGTGCGCCTGCCCGAGGGGCCGGTGGACGGTCGGTGGCCTTTGCGCTGGTTCGGGAGTTTCCAGGGCTCCTGTGGACGCTGCCTTCTGTTTTTCATGATGCCGAGCTGCTGCTGGCTCTAAGAAGAGCCAGTCATGTGGGTCTTCCTGGCATAGGGCGCTCATGTAACTTGTTTCTCATCCGTGGACCGTGTGCAGCCCCTGGCAACGTAGGCATGTGTCCTGCCTCCTTCCTCGGGGTGCCTGGCCCTCAGAGGGAGACGGCCCTGGCGTCCTGAGCAGCTCACTGCAGTCGCCCGCTGTGGCCAGGAAGCCCGGTTCCCTGGGTCTGGACGCATGTTCCAGGCAGAGGGCGTTACCCCGACCGGAGGCTTTCCCGCGTGGCTGCCGTTGTTCTGACCGTGGTCCAGCCAGCTGCCGTGGACGCTGGCTGAGCGCCAGCACCGCTCGCAGTGACCAGGCCCCTCTCACCCGCAG
Seq C2 exon
GTGCGCTACCGCCGGGAGCAGCTGTGCGCGCGGCAGCCGCCGCACTTCCCGCTGCTGGAGGACCTGATGCGGGACGGCAGCCACGGGGCGGCGCTCCTGGCCGTGGTGCACTACTACTGCCCGGGGCAGCTGAAGCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006008:ENSBTAT00000007892:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(17.8=100)
A:
NA
C2:
PF0030726=CH=FE(32.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development