RnoINT0028770 @ rn6
Intron Retention
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3399474-3400760:-
Coord C1 exon
chr3:3400701-3400760
Coord A exon
chr3:3399616-3400700
Coord C2 exon
chr3:3399474-3399615
Length
1085 bp
Sequences
Splice sites
5' ss Seq
GTGGTACAG
5' ss Score
1.34
3' ss Seq
TTTCCTTTTATCAACTGCAGGTC
3' ss Score
11.28
Exon sequences
Seq C1 exon
CCTGGCCTGGAGCATGCTGTGATGCACTGCATGCTGGAACCTGTGGACTTTGCACGTGTG
Seq A exon
GTACAGTATGAGGCGGGTTCCCTACGATAGTATGTGTTGTGGGCTCTGAGAAACAAGTTAAAATGTGTGTTGGAATATTCAGTCAACAAAGCAAGCATTGTCGCCAAAAGTAAAGGATTTGGTTTCAAGTGTTTTTCTAATGAGCATCACTACTAATTATGCCAAGTATTTATGGAAGTATTAGCTGAAAGTCTAGATTCCAAGATGATCTTTGAGTTGGACTCATCTGTAGAACTCTCAGAAACCAACAGCTCTTGTTCTAGGCAGTGCTGGCTCCCTTGCTTGTTCTTAGTTTCTATTGTATGTGCTCCTTCTGGAGAAAATGTGGGCTGGTGGGTACCCTGCTCTGGGCGCTGACTTAGGTGAGAGCGGCACACTGCAGCTCTCGGGGAGTCGTGTCTACACTGAGCAGCCCCCCTCTGACTGTGAAGAGAAAGGCATGGGTGGACTGTAGTGTATAGAATATCAACAGGTAGCTGCTTCAGGTGTGCACAGAAGGGAGTCTTGGTCTGGCATTTGCTTGATGATCTTGTGAGTTTAGTCCTGATGTTTCACTTGTAGTTCTTGGTGGCTGCTGTAGTGGTGTGAGAAATTTTGTTTAATCTGGTTTCTGAAATTTCTCAAACTATTGATTAATGCTATTTTGTACTTCTTAATGGCCAGCATTAATGTTGATAATACTTAGAACAATGCCTGTAGCTTGGGTCTTTCAAGCATCTGAATGCCCACTGTTTAACTTGTTTCTCATTAGTTTATAATACATTGGCGTCCGATAGTATAGATATGTGTTTTGTCTCCTTCCATGTGTGCCCACTGCCAGAGTCGGTTTAGAGTTAGACTGGCCCTGGGGTGTTAGCAGCGAACCTCTGCCATGCAGTGTAGCCATGGAGCCCAGTCCCTGGATCTGCCGTGTTTGCTCTGGACAGAGGACATCATCTACACAGTCTGACCTTTTCCAGGCAATAACAGTTGGTCTTCACGTGGCTCTAGGCTTGATGTAAATCTTGCTCTAGCAGTGTGCCTGTAACATACACAGGGTGAAGCGATCTCACACGCAGAGACCATTTTCCTTTTATCAACTGCAG
Seq C2 exon
GTCCGCTATCGGCGAGAACACCTCTCTGCTAGGCAGTCACCCTACTTCCCGTTGTTGGAGGACTTGATGAGAGACGGCAGTGATGGCGCTGCTCTCTTAGCAGTGGTTCACTATTACTGCCCAGAGCAGATGAAACTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883:ENSRNOT00000024163:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF119713=CAMSAP_CH=PU(48.8=85.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCTGGAGCATGCTG
R:
CCAGTTTCATCTGCTCTGGGC
Band lengths:
198-1283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]