RnoEX0016535 @ rn6
Exon Skipping
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3399474-3403096:-
Coord C1 exon
chr3:3403016-3403096
Coord A exon
chr3:3400701-3400760
Coord C2 exon
chr3:3399474-3399615
Length
60 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGGTGTCTCTGAAAGCCT
3' ss Score
5.2
5' ss Seq
GTGGTACAG
5' ss Score
1.34
Exon sequences
Seq C1 exon
GTAAATCTTAAAATGAGAGAGATAACAGAGAAAGAAGTTAAATTAAAACAGCAGCCACTGGAAAGTCCCGCTCATCAAAAG
Seq A exon
CCTGGCCTGGAGCATGCTGTGATGCACTGCATGCTGGAACCTGTGGACTTTGCACGTGTG
Seq C2 exon
GTCCGCTATCGGCGAGAACACCTCTCTGCTAGGCAGTCACCCTACTTCCCGTTGTTGGAGGACTTGATGAGAGACGGCAGTGATGGCGCTGCTCTCTTAGCAGTGGTTCACTATTACTGCCCAGAGCAGATGAAACTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883_MULTIEX1-3/4=1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.366 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF119713=CAMSAP_CH=PU(48.8=85.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCAGCCACTGGAAAGTC
R:
CTAAGAGAGCAGCGCCATCAC
Band lengths:
135-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]