RnoEX0016536 @ rn6
Exon Skipping
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3391377-3403096:-
Coord C1 exon
chr3:3403016-3403096
Coord A exon
chr3:3399474-3399615
Coord C2 exon
chr3:3391377-3391516
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTATCAACTGCAGGTC
3' ss Score
11.28
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTAAATCTTAAAATGAGAGAGATAACAGAGAAAGAAGTTAAATTAAAACAGCAGCCACTGGAAAGTCCCGCTCATCAAAAG
Seq A exon
GTCCGCTATCGGCGAGAACACCTCTCTGCTAGGCAGTCACCCTACTTCCCGTTGTTGGAGGACTTGATGAGAGACGGCAGTGATGGCGCTGCTCTCTTAGCAGTGGTTCACTATTACTGCCCAGAGCAGATGAAACTGGATG
Seq C2 exon
ACATTTGCCTGAAGGAGGTGCCATCGATGGCTGACAGCCTGTATAACATCCGGCTTCTGAGGGAGTTTTCCAACGAGCATCTGAACAAGTGTTTCTATCTCACCCTGGAGGATATGCTGTATGCTCCCCTAGTGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883_MULTIEX1-4/4=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.366 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF119713=CAMSAP_CH=PU(48.8=85.4)
C2:
PF119713=CAMSAP_CH=PD(50.0=89.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGAGATAACAGAGAAAGAAGTT
R:
AGCACTAGGGGAGCATACAGC
Band lengths:
204-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]