MmuEX0009005 @ mm10
Exon Skipping
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25945134-25955292:-
Coord C1 exon
chr2:25955260-25955292
Coord A exon
chr2:25952678-25952819
Coord C2 exon
chr2:25945134-25945273
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTATCAACTGCAGGTC
3' ss Score
11.28
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TCTCCCTCCAAGTGGTATTGGAAGTTAGTACCC
Seq A exon
GTCCGTTATCGGCGAGAGCACCTCTCTGCTAGGCAGTCACCCTACTTCCCGTTGTTGGAGGACTTGATGAGAGACGGCAGTGATGGCGCTGCTCTCTTAGCAGTGGTTCACTATTATTGCCCAGAGCAGATGAAACTGGATG
Seq C2 exon
ATATCTGTCTGAAGGAGGTGCCATCAATGGCTGACAGCCTCTATAACATCCGCCTTCTGAGGGAGTTTTCCAACGAGCATCTGAACAAGTGTTTCTATCTCACGCTGGAGGATATGCTGTATGCCCCCCTAGTGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933_MULTIEX2-4/5=2-C2
Average complexity
S
Mappability confidence:
90%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
PF119713=CAMSAP_CH=PU(48.8=85.4)
C2:
PF119713=CAMSAP_CH=PD(50.0=89.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTGGTATTGGAAGTTAGTACCC
R:
TACAGCATATCCTCCAGCGTGA
Band lengths:
146-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types