MmuINT1006010 @ mm10
Intron Retention
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25952678-25956327:-
Coord C1 exon
chr2:25956247-25956327
Coord A exon
chr2:25952820-25956246
Coord C2 exon
chr2:25952678-25952819
Length
3427 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
TTTCCTTTTATCAACTGCAGGTC
3' ss Score
11.28
Exon sequences
Seq C1 exon
GTAAATCTTAAAATGAGAGAGATAACAGAGAAAGAAGTTAAATTAAAACAGCAGCCACTGGAAAGTCCCGCTCATCAAAAG
Seq A exon
GTAAAGGGTAATTTTAATTTCTTCGAAACACACTAAGGTAAATGTTAGTAGTTTTAAAGAATTATCTTTGTTTCTACTTGCTCATTCTATATTTTTATCACTCTGAGCAAGCCGGCCTCTTAGATTCTCCATGCTTCAGTTAGGAGTTTCCATGGGCAACCTGTCTTCTATGCCCAACCCCAAAAGGTCTGGTTTGTTGAACTAGGGGTATTCTGGGAGGACTTGGGGGGTGTTGGGGGGAGGCTCAGTAAGGAAGCAATGTAGCCTGAGCTGGGAGTGAGCTTTAGAAGGTCAGAAATTGAGCAGAAAACTCCCAGCTGCACTCATGCAGATACTTGAGATGGCCTGTGAGGTGCCATGGGACAGATGGGGGTCTAAACCCTGTGCCTGGAGCCAGTGGGAAGTGTGTACCTTGGGATGGGTGTAGATGGGTACGTTTGTGCCACGTTCTACCTTTGGTCTTGTCCCTGGCCATTTTCTCTTTTGCCAAGGCCATGTATCACAGTCAGTGGGATGTACCCAGGAATGCCTGACTATTGACACAGTTTCACTACTGAGAGCAGCATGTGTTCTCCCTGTGTAGTTTTCTCTCTACACTGGTCAGCTCTAGTCAGCCAGGTCAGTAGAGGATTAGGCTGGAGCTGAGCACCTCCCTAATCTTTGGATGGGGACAGGCTCACATGGGCATAGACAAAGGGCAGACCTGTAGCCTGGTCCCCTGATTTTCTCAAGTTTGGAACTGTTCTTTGCTATTGTGAAACAGAGTTGTAAAGGGGACAGGTTACCTTCCAGTTAAATTGCCTGGTGTTGTGATTAGCTAAGGTCATGCACACTGGAAAGCCTTTGCTATCAGAGGCTGTCTCTAACTCTCCTGTGTGAGCATGTGTGTCATGGCCACACCTGGACCTGCAGTGCTGACATTCCTTTCCACCTTCCTTCCTGCTTCCTGAGCAGTCTCCCTCCAAGTGGTATTGGAAGTTAGTACCCGTAAGTGACCCAGGCCACCATCCACCATCTGCAAAGCCATCTTGTTGCCATCATGCGCTTCCATTAAAATTGCTCGCACCCAAGATTGGTTTTTGTCTGTTTGTTTAAGTGTCCGCCTGGGGGCTGTGCGGCTTGTCTAGCATGAGCCCTGCTGGCCACGCTGATGGGTTCTGTTATGTGGCACATTGGGATGCCATGTTCATTCCCCTAGGCTCTTAGTGATCTCTAAGTGACCAGTACAGCATAGCTGACAGGACACTGTCTTTTCTAGCAGATGCTAAGAGGACTGGGGGTTACCTAGTGGCTGGAATCATTTCATGGCCTTTTCTTTCTGCTGTTACTTTGCCTGGGGGCTGGTGTCTCTAACCACCTTCCCTAGAACCTGTATTCTAGGCTGTCAGATTGAAGAGGCATTCTCCCACTGAGGGTACAGGTGGACTGCAGAGAGGGCTGTCGATGGTGTATTTTGATGTGGTCTTCTTGTTTCTACCCCTCAGGTCATATGGAGGTCAGCTCAGATTCTGTAGTCTGAGTTAGGTCAGTTCAAATGCAGGGTTTCTGAAATTACGTATGAATTTTCACACAAAGTTTAAAAAACAGGATTTGATTTAGTAATTTCAGCAGTTTCTAACTGGTGGCCCAGAATGGAAGTAGACCAGTTTGTTGCTGCCCTTATAGGAAATGCCTTGTGTCAAGTGGTACCTTTTTATGTGAACTCTTTGCAGATGGCTTTGTAAGTGCCCTTTGATTGCTTGGGTCCTGTAGCTTCATTATTTGGCCCAGATTTTTTTTTTTTTTGGGTCCCCACAGCTGTGGGCTGCAAAAGGCCAATGTAAACCTTGAATGTACTTCTTGCTAAGTGTGTTTGTGAGAAGGAGGAGGAAGGCATGCTTAATGAATGTTTGAGTACTGAATTTGACCAAGGCAAGGGCTCACACACTCAGGTGTCCTGTAGAGAGGTTTGGTTTCAGATACAATTGATTAAAAAAAGAGAACTATAACCCAAAACAATCCGCCTTAACTTTGTTAGAGAGGCTATGGGTAGCCTACAGTGGTAAATAGACCAACAAGAAAACGTGTGGTCAAGGTTGGTATGTTTTGGGCTTTACCTAAACATGTCCCAGCTAGAAGTTTGAAGATGTGGGTGAGCACAGCAGCCATGTGAGCCTTCTGGGCCCCTGTAATTCAGTGTCAGCCTAATTTTTACCCATGCCATCCATCTTTACTCAAGAAACCATTTGCTTTACTGCATGTCTGCTCACTCCCTGTCTGCTGTCTCTGAAAGCCTGGCCTGGAGCATGCTGTGATGCACTGCATGCTGGAACCTGTGGACTTTGCACGTGTGGTACAGTATAAGGCGGGTTCCCTATGATAGTGCTTGTTGTGGGCTCTGAGAAACAAGTTAAAATGTGTGTTGGAATATTCAGTCAACACAAAACAAGCCTTGTTGCTAAATGTGAAGGAGTCAGTTCCAAGTGTTTTTCTAATGAGCATCACTACTGCTCATGCAGAATATTTATGGAAGTGTTAGCTGAAAGTCTAGATTCCAAGATGATTCTTTGAGTTGGATGACTTACCTGTAGAACTCTCAGAAACCAATAGTTCTTCTTCTAGGCAGGTGCTGGCTCCCTTGTTTTTAGTTTCTATTGTGTGTGCTCCTGGAGAAAAATGTGGACTGGTAGGTACCCTGCCCTGGGCACTGATTCAGGTGAGAGCGGTACACTGCAGCTCTCAAGGAGTCGTGTCTACACTGAGCAACCCCTTCTCTGCTAAGCTTTTACTGACAGTAGATAGAAAAGTATGGATGGACTGTAACGCATAGAATATTGACAGGTAGCTTCAATATTGGGGTGTGCACATAAAGGAGCCTTGGTCTGGCATTTGCTTGATGATCTTGTGAGTTTAGCACTGATGTTTCACTTATAGTTCTTGGTGGCTGGTGTAGTGGTGTGAGAAATTTTTTAAATCTGGTTTCTGAAATTTCTCAAACTATCAATTAATGCTATTTTGTACTTTTTAATGACCAGTGTTAATGTTGATAATACTTAGAACAGTGCCTGTAGCTTGGGTCTTTCAAGCATCTGAATGCCCACTGTTTAACTTGTTTCTCATTAGTTTGTAATGCATTGGCTCACGGTAGTATAGTTATGTGTTTTGTCTCCTTCCCATGTGTGCCCACTGCCAGAGTCAGTTTAGAGTTAGACTGACCCTGGTGGTGTTAGCAGTGAATCTCTGCCATACAGTGTAGCCATGGACCCCAGTCCTTGGATCTGACTTGTTTGTTCTGGATAGAGGATGTCATCCACATAGTCTGAATTTTTCCAGGCAATATCATGTGGCTCTAGACTTGATATAAATCTTGCTCTAGCAGTATGCCTGTAAGATACACAGACTGAAGCGATCTCACACGCAGAGACCATTTTCCTTTTATCAACTGCAG
Seq C2 exon
GTCCGTTATCGGCGAGAGCACCTCTCTGCTAGGCAGTCACCCTACTTCCCGTTGTTGGAGGACTTGATGAGAGACGGCAGTGATGGCGCTGCTCTCTTAGCAGTGGTTCACTATTATTGCCCAGAGCAGATGAAACTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933:ENSMUST00000114167:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=NA C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF119713=CAMSAP_CH=PU(48.8=85.4)
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types