DreEX6014316 @ danRer10
Exon Skipping
Gene
ENSDARG00000035122 | camsap1b
Description
calmodulin regulated spectrin-associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-070705-301]
Coordinates
chr5:64949573-64956337:-
Coord C1 exon
chr5:64956305-64956337
Coord A exon
chr5:64952392-64952533
Coord C2 exon
chr5:64949573-64949712
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCATATCTTTTTCAGGTA
3' ss Score
11.45
5' ss Seq
ACGGTACAA
5' ss Score
4.76
Exon sequences
Seq C1 exon
TCTCCCTCAAAATGGTATTGGAAACTAGTACCT
Seq A exon
GTACGGTATCGGCGAGATCACGCTTCAGGTCGACAGCTTCCCTATTTCCAGATGCTGGAAGACCTGATTAGAGACGTGTGTGACGGTGCTGCATTGCTGACCGTGGTCCATTACTACTGCCCTGAACTGATGAAGCTTGACG
Seq C2 exon
ATATCTGCTTGAAAGAGGTGACCTCAATAGCAGACAGCCTTTATAATATCCAGCTGCTGAAAGAGTTTGCCAATGAGTACCTTAACAAAAGCTTCTATTTGACTCTTGAAGACCTGTTATATGCACCACCTGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035122-'9-10,'9-9,10-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(6.4=100)
A:
PF0030726=CH=FE(29.9=100)
C2:
PF0030726=CH=FE(29.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCCTCAAAATGGTATTGGAA
R:
CACAGGTGGTGCATATAACAGGT
Band lengths:
167-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]