BtaEX0006953 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006008 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr11:103459980-103468600:-
Coord C1 exon
chr11:103468520-103468600
Coord A exon
chr11:103465389-103465530
Coord C2 exon
chr11:103459980-103460119
Length
142 bp
Sequences
Splice sites
3' ss Seq
CAGGCCCCTCTCACCCGCAGGTG
3' ss Score
10.55
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTAAATCTTAAAATGCGAGAGATAACAGAGAAAGAAGTTAAGTTAAAACAGCAGTTATTGGAAAGCCCAGCTCATCAAAAG
Seq A exon
GTGCGCTACCGCCGGGAGCAGCTGTGCGCGCGGCAGCCGCCGCACTTCCCGCTGCTGGAGGACCTGATGCGGGACGGCAGCCACGGGGCGGCGCTCCTGGCCGTGGTGCACTACTACTGCCCGGGGCAGCTGAAGCTGGACG
Seq C2 exon
ATATATGCTTGAAGGAGGTGACGTCGATGGCTGACAGTCTGTATAACATTCGGCTTCTGAGAGAATTCTCCAATGAATATCTTAACAAATGCTTTTATCTCACCCTAGAAGATATGCTGTATGCTCCTTTAGTGTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006008_MULTIEX2-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(17.8=100)
A:
PF0030726=CH=FE(32.2=100)
C2:
PF0030726=CH=FE(31.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTTAAAATGCGAGAGATAACAGA
R:
CTTCAACACTAAAGGAGCATACAGC
Band lengths:
218-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development