GgaEX6015479 @ galGal4
Exon Skipping
Gene
ENSGALG00000001692 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr17:8193075-8197935:+
Coord C1 exon
chr17:8193075-8193155
Coord A exon
chr17:8197129-8197270
Coord C2 exon
chr17:8197796-8197935
Length
142 bp
Sequences
Splice sites
3' ss Seq
CACTAGTTTTCTTTTTTCAGGTG
3' ss Score
8.9
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GTGAACCTTAAAATGAGAGAGATAACAGAGAAAGAGATTAAATTAAAACAGCAATTAATGGAAAGTCCAGGACATCAGAAG
Seq A exon
GTGCGTTACCGAAGAGACCATCTGTCAAGCAGGCAATTACCTTACTTCCCTTTGCTCGAGGATTTGATGAAGGATGGTAGCGACGGTGCTGCTCTGTTAGCTGTGATACACTATTATTGTCCAGAGCAAATGAAGCTAGATG
Seq C2 exon
ATATTTGTTTGAAGGAGGTAACATCAATCGCTGACAGCCTTTATAATATTCAACTCTTGAGAGAATTCTCAAATGAATATCTAAACAAATGCTTTTATCTCACGCTGGAGGACATGTTGTATGCTCCTCTAGTTTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001692-'4-11,'4-10,8-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(17.8=100)
A:
PF0030726=CH=FE(32.2=100)
C2:
PF0030726=CH=FE(31.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGAGAGATAACAGAGAAAGAGA
R:
CTTTAAAACTAGAGGAGCATACAACA
Band lengths:
210-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]