RnoINT0028769 @ rn6
Intron Retention
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3400701-3403096:-
Coord C1 exon
chr3:3403016-3403096
Coord A exon
chr3:3400761-3403015
Coord C2 exon
chr3:3400701-3400760
Length
2255 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CTGTCTGGTGTCTCTGAAAGCCT
3' ss Score
5.2
Exon sequences
Seq C1 exon
GTAAATCTTAAAATGAGAGAGATAACAGAGAAAGAAGTTAAATTAAAACAGCAGCCACTGGAAAGTCCCGCTCATCAAAAG
Seq A exon
GTAAAGGGTAATCTTAATTTGTTTGAAACACACTAAGTTAATGTTAGTAGTTTTGAAGAATTATGTTTGTTTCTACTTGCTCATTCTATATTTTTATCACCCTAAGCAAGCCAGCCTCTTAGATTCTCCTGGTGGCTGACTCTCCATGCCTCAGTTAGGAGTTGCCATGGGCAACCTGTCTTCTATGCCCAACCCCAAAAAGGTCTGATGGTTTGTTAACCAGGGGTATTCTGGGAGGACTTGGGGGGTTCAGTGAGGAAGCGTGTAGCCTGAGCTGGGAGTGAGCTTCAGAAGGTCAGAGATGGAGCAGAAAAGGCCAGGTAGCAGCTGTGCCCATGCAGATTCTTGAGATGGCCTGTCAGGGGCCATGAGACTGATGGGGGTCCAAAGCCCAGTGCCTGGAGCCAGTGGAAGTGCGTGCCTTAGGACGGGTGCAGATGGGCACATTTCTTCCACAGTACTGCTTTGGCCTTGTCCCTGGTCATTTTCTCTTTTGCCAAGGCCATGTGTCACAGTCAGTGGAATGTACCCAGGAGTGCCTGACTGTTAACACAGTTTTGCTCCCAAGAGCAGCATGTGTTCTCCCCTTGTGGTTTTCTCTCTACAGTGGTCAGCTCTAGTCAGCCAGGTCAATAGAGAATCAGGCTGGGACTGAGTGCCTCCCTAATCTTTGGGTGGGGACAGGCCCACATGGGCATAGGCAAAGGGAGCAGACCTTTAGCCTGCTCCCCTGTCTTTTTCAAGTTTGGAACCATTCTTTGCTTTTGTGAAGCAGAGAGGTGTGAAGGGGACAGGTTACCTTCCGGTTAAATTGCCTGGTATTGTGATTAGCGAGGTCGTGCACACTGGAAAGCCTCTGCTACCAGAGGCTCTCTGTCTCTTCTGTGTGAGCATGTGTGTCACAGCCATACCTGGACTGCAGTGCTGACATTCCTTTCCACCTTCCTTCCTGCTTCCTGAGCAGTCTCCCTCCAAGTGGTATTGGAAGTTAGTACCCGTAAGTGACCCAGGCCGCCATCCGCCATCTGCAAAGCCATCTTGTTGCCATCATGCGCTTCCATTAAAATTGCTCGCACCCAAGATTGGTTTTTGTTTGTTTGTTTAATGTCCACCTGGAGGCTGTTGTAGCTTGTCTAGCATGAGCCCTGCTGGCCACGCTGATGGGTTTTGTTATGTGGCACTTTGGGATGCCATGTCCATTCCCCTAGGCGCTAAGTGATCTCTGAGTGACCAGTACAGCATAGCTGACAGGACACTGTCATTTCTAGCAGACGCTAAGAGGACTAGGGGTGACCTAGTGGCTGGACTCATTCCACTCTGCTGTGACTTTGCCTGAGCGGCGGTCTCTCTCACCGCCTTCCCTAGAACTGTCAGATTGCAAAGGCTTTCTCCCACTGAGGGTACAGGTGGACCGCAGAGAGGGCTGTTGCTGGTGTGGTCTCCTTGTTTCTATCCCGTAAGTCTACATGGAGCTCAGCTCAGATTCTGCAGTCTGAGTTAGGTCAGTTCAAATGCAGGGCTTCTGAAATTATGTGTGAATTTCCACACAAAGTGAAAACCAGGATTTGATTTAGTCATTTCAGCAGTACCTAACTGGTGGCCCATTTGGGAAGTGATCCAGTTTGTTGCTGCCCTTATAGGAAATGGCTAGTGCCAAGTGGAACCTTTTTATGTGCTTTTGGATCTCTTTGCAGATGGATTTGTATGTGCCCTTTGATTGTTTGGGTCCTGTAGCTTCATTATTTGGCCCATATTTCCCTTTGGGTCCCCACTTGGGGCCCCATGGCTGTAGGCTGCTAAAGGCCCTGTAAACCTTGAGTGGAGTTCCCATTACGTGTGTTTGTGAGGAGGAGGAAGAGGAGGAGGAGGAGGAAGGAGGAGGAGGAAGAAGAGGAGGAGGGCTTGCTTAGTGACACTCAGGTGTCCTGAAGAGAGGTTTGGTTTCAGACAAGTTTGATGAAAGAGACAACTGTAACCCCAGACAGTCCTCCTTAACTTTGCTTTGTTAGAGAGGCTGTGGGGATCCTACAGTGGTGTTCAGTAAGTAGTCCAACAAGAAAATGTGGTCAAGATCGACCACCCAAACACTTCCCAGCTAGAAGTTTGAAGGTGTGGTTGAGCACAGCAGCCATGTGATCCTTCTGGGCCCCTGTAGTTCAGTGTCAGCCTAATTTTACCCATACCATCCATTCTTTACTCAAAAACCATTTGCTTTACTGCATGCCTGCTCACTCCCTGTCTGGTGTCTCTGAAAG
Seq C2 exon
CCTGGCCTGGAGCATGCTGTGATGCACTGCATGCTGGAACCTGTGGACTTTGCACGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883:ENSRNOT00000024163:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.366 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]