DreEX0018711 @ danRer10
Exon Skipping
Gene
ENSDARG00000035122 | camsap1b
Description
calmodulin regulated spectrin-associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-070705-301]
Coordinates
chr5:64952392-64959558:-
Coord C1 exon
chr5:64959478-64959558
Coord A exon
chr5:64956305-64956337
Coord C2 exon
chr5:64952392-64952533
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCGCTACTGGGATAGTCT
3' ss Score
3.65
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTGAACTTGAAAATGAGGGAGATCACAGAGAAAGAGCACAAATCAAAACAGCATCTGCTGGAATCTCCAAGTCATCAGAAG
Seq A exon
TCTCCCTCAAAATGGTATTGGAAACTAGTACCT
Seq C2 exon
GTACGGTATCGGCGAGATCACGCTTCAGGTCGACAGCTTCCCTATTTCCAGATGCTGGAAGACCTGATTAGAGACGTGTGTGACGGTGCTGCATTGCTGACCGTGGTCCATTACTACTGCCCTGAACTGATGAAGCTTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035122_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(16.6=100)
A:
PF0030726=CH=FE(6.4=100)
C2:
PF0030726=CH=FE(29.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGATCACAGAGAAAGAGCA
R:
AATAGGGAAGCTGTCGACCTGA
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]