GgaEX0001972 @ galGal3
Exon Skipping
Gene
ENSGALG00000001692 | CAMSAP1
Description
NA
Coordinates
chr17:8888081-8892276:+
Coord C1 exon
chr17:8888081-8888161
Coord A exon
chr17:8889112-8889144
Coord C2 exon
chr17:8892135-8892276
Length
33 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTGCTTCCTGAGCAGTCT
3' ss Score
6.37
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTGAACCTTAAAATGAGAGAGATAACAGAGAAAGAGATTAAATTAAAACAGCAATTAATGGAAAGTCCAGGACATCAGAAG
Seq A exon
TCTCCTTCCAAATGGTATTGGAAATTAGTACCT
Seq C2 exon
GTGCGTTACCGAAGAGACCATCTGTCAAGCAGGCAATTACCTTACTTCCCTTTGCTCGAGGATTTGATGAAGGATGGTAGCGACGGTGCTGCTCTGTTAGCTGTGATACACTATTATTGTCCAGAGCAAATGAAGCTAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001692-'4-6,'4-4,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(17.8=100)
A:
PF0030726=CH=FE(6.4=100)
C2:
PF0030726=CH=FE(32.2=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAGTCCAGGACATCAGA
R:
CTAACAGAGCAGCACCGTCG
Band lengths:
123-156
Functional annotations
There are 0 annotated functions for this event