MmuEX0009003 @ mm10
Exon Skipping
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25952678-25956327:-
Coord C1 exon
chr2:25956247-25956327
Coord A exon
chr2:25955260-25955292
Coord C2 exon
chr2:25952678-25952819
Length
33 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTGCTTCCTGAGCAGTCT
3' ss Score
6.58
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GTAAATCTTAAAATGAGAGAGATAACAGAGAAAGAAGTTAAATTAAAACAGCAGCCACTGGAAAGTCCCGCTCATCAAAAG
Seq A exon
TCTCCCTCCAAGTGGTATTGGAAGTTAGTACCC
Seq C2 exon
GTCCGTTATCGGCGAGAGCACCTCTCTGCTAGGCAGTCACCCTACTTCCCGTTGTTGGAGGACTTGATGAGAGACGGCAGTGATGGCGCTGCTCTCTTAGCAGTGGTTCACTATTATTGCCCAGAGCAGATGAAACTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933_MULTIEX2-2/5=1-4
Average complexity
C1
Mappability confidence:
75%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.259 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF119713=CAMSAP_CH=PU(48.8=85.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGAAAGTCCCGCTCATC
R:
CTAAGAGAGCAGCGCCATCAC
Band lengths:
126-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types