DreEX0020194 @ danRer10
Exon Skipping
Gene
ENSDARG00000019383 | cdc42bpb
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
Coordinates
chr20:18560336-18573489:-
Coord C1 exon
chr20:18573341-18573489
Coord A exon
chr20:18566294-18566387
Coord C2 exon
chr20:18560336-18560536
Length
94 bp
Sequences
Splice sites
3' ss Seq
GTTGTTTCTTGCTCCCACAGGGA
3' ss Score
10.65
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
TACTTGGTGATGGATTATTACGTTGGCGGTGACCTGCTGACGCTGCTTAGTAAATTTGAAGACCGGCTGCCGGAGGACATGGCCAAGTTCTACGTGGCGGAGATGGTTCTCGCCATCCACTCCATCCATCAGCAGCGCTACGTACACAG
Seq A exon
GGATATAAAACCCGACAACGTGCTGCTGGACATGAACGGCCACATCCGACTCGCTGACTTCGGCTCCTGTCTGAAGATGATGCAAGACGGCACG
Seq C2 exon
GTCCAATCTTCAGTGGCTGTGGGCACACCAGACTACATCTCTCCAGAGATCCTGCAGGCCATGGAGGACGGCATGGGGAAATACGGGCCGGAGTGTGACTGGTGGTCGCTGGGCGTTTGCATGTATGAGATGCTGTACGGCGAGACACCCTTTTACGCCGAATCCCTGGTGGAGACCTATGGAAAGATCATGAACCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019383-'7-9,'7-7,9-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.4=100)
A:
PF0006920=Pkinase=FE(11.6=100)
C2:
PF0006920=Pkinase=FE(24.7=100)
Main Skipping Isoform:
ENSDART00000049437fB1800
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTACGTTGGCGGTGACCTG
R:
AGATGTAGTCTGGTGTGCCCA
Band lengths:
174-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]