RnoEX6029844 @ rn6
Exon Skipping
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135779910-135786808:-
Coord C1 exon
chr6:135786660-135786808
Coord A exon
chr6:135780383-135780476
Coord C2 exon
chr6:135779910-135780110
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTATCTCACCCACAGAGA
3' ss Score
10.21
5' ss Seq
ACTGTAGGT
5' ss Score
4.15
Exon sequences
Seq C1 exon
TACTTGGTTATGGATTACTATGTGGGTGGTGACTTGCTGACCCTGCTGAGTAAGTTTGAAGACAAACTTCCAGAAGACATGGCGAGGTTCTACATTGGCGAGATGGTGTTGGCCATCGACTCGATCCACCAGCTCCACTATGTGCACAG
Seq A exon
AGACATTAAACCCGACAACGTCCTTCTGGATGTCAACGGTCACATCCGCCTGGCTGACTTTGGCTCGTGCTTGAAGATGAACGATGACGGCACT
Seq C2 exon
GTTCAGTCTTCCGTGGCTGTGGGCACACCTGACTACATCTCACCAGAGATCCTGCAGGCCATGGAGGATGGCATGGGCAAATACGGGCCCGAGTGTGACTGGTGGTCCCTGGGCGTCTGCATGTATGAGATGCTGTATGGAGAAACGCCATTTTATGCAGAGTCTCTGGTGGAGACATATGGAAAGATCATGAACCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675-'11-12,'11-10,17-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.4=100)
A:
PF0006920=Pkinase=FE(11.6=100)
C2:
PF0006920=Pkinase=FE(24.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGAAGACATGGCGAGG
R:
CGTATTTGCCCATGCCATCCT
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]