MmuEX6083037 @ mm10
Exon Skipping
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:111327416-111336174:-
Coord C1 exon
chr12:111336026-111336174
Coord A exon
chr12:111329139-111329232
Coord C2 exon
chr12:111327416-111327616
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTACCTCACCCACAGAGA
3' ss Score
9.52
5' ss Seq
ACTGTAGGT
5' ss Score
4.15
Exon sequences
Seq C1 exon
TACTTGGTCATGGATTACTATGTAGGTGGTGATCTGCTGACCCTGCTGAGTAAGTTTGAAGACAAGCTTCCGGAAGACATGGCGAGGTTCTACATTGGCGAGATGGTGTTGGCCATTGACTCGATCCACCAGCTCCACTATGTGCACAG
Seq A exon
AGACATCAAGCCCGACAACGTCCTTCTAGATGTGAACGGTCACATCCGCCTGGCTGACTTTGGCTCGTGCTTGAAGATGAACGATGATGGCACT
Seq C2 exon
GTTCAGTCTTCCGTGGCCGTGGGCACACCTGACTACATCTCACCAGAGATCCTGCAGGCCATGGAGGATGGCATGGGCAAATACGGGCCCGAGTGTGACTGGTGGTCGCTGGGCGTCTGCATGTATGAGATGCTATACGGAGAAACCCCGTTCTACGCAGAGTCTCTGGTGGAGACATACGGGAAGATCATGAACCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-'14-11,'14-7,16-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.4=100)
A:
PF0006920=Pkinase=FE(11.6=100)
C2:
PF0006920=Pkinase=FE(24.7=100)
Main Skipping Isoform:
ENSMUST00000041965fB7369
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTCCACTATGTGCACAG
R:
CTGCGTAGAACGGGGTTTCTC
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types