GgaEX1014028 @ galGal4
Exon Skipping
Gene
ENSGALG00000011432 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr5:49850963-49855677:-
Coord C1 exon
chr5:49855529-49855677
Coord A exon
chr5:49852059-49852152
Coord C2 exon
chr5:49850963-49851163
Length
94 bp
Sequences
Splice sites
3' ss Seq
CACTTCTTTTTGTCATACAGGGA
3' ss Score
8.2
5' ss Seq
ACAGTATGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
TATCTAGTGATGGACTACTATGTTGGTGGTGACTTGCTGACGCTTCTCAGTAAGTTTGAAGACAAACTTCCTGAAGACATGGCAAGGTTCTACATTGGTGAAATGGTGCTTGCAATACATTCCATACATGAGCTGCATTATGTGCACAG
Seq A exon
GGACATAAAGCCTGATAATGTTCTTTTGGACATGAATGGCCATATACGACTGGCAGATTTTGGGTCCTGTCTGAAAATGAGTGAAGATGGCACA
Seq C2 exon
GTGCAGTCCTCTGTAGCAGTGGGTACGCCAGACTACATCTCCCCTGAGATACTGCAAGCCATGGAGGATGGAATGGGAAAATACGGGCCTGAATGTGACTGGTGGTCACTGGGGGTCTGCATGTATGAAATGCTTTATGGTGAAACACCTTTTTATGCAGAGTCATTAGTGGAAACCTATGGGAAAATTATGAATCACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-'5-11,'5-10,7-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.4=100)
A:
PF0006920=Pkinase=FE(11.6=100)
C2:
PF0006920=Pkinase=FE(24.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGTGGTGACTTGCTGAC
R:
GGGGAGATGTAGTCTGGCGTA
Band lengths:
173-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]