DreEX0021049 @ danRer10
Exon Skipping
Gene
ENSDARG00000013704 | cers2a
Description
ceramide synthase 2a [Source:ZFIN;Acc:ZDB-GENE-020808-2]
Coordinates
chr19:8858407-8863939:-
Coord C1 exon
chr19:8863811-8863939
Coord A exon
chr19:8858803-8858909
Coord C2 exon
chr19:8858407-8858560
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCTGTCCGATAACAGTCT
3' ss Score
6.59
5' ss Seq
TTGGTGCGT
5' ss Score
6.18
Exon sequences
Seq C1 exon
GACTTTAAAGAGCAGATAGTGCACCATGTTGCCACCATCTTGCTGATCAGTTTCTCGTGGTGTGTGAACTACATCAGAGCAGGAACCCTCATTATGCTGGTGCACGACGCCTCCGACTACCTGCTGGAG
Seq A exon
TCTGCCAAGATGTTCAACTACGCCGGCTGGAGGAAAACCTGCAACTACATATTCATCATCTTCGCTGCCATCTTCATCATCACCAGACTCGTCATCTTCCCTTTTTG
Seq C2 exon
GATCCTGCATTGCACCTGGGTGTATCCGGTGACTGTTTATCCTCCGTTTTTTGGGTATTACTTCTTCAACGGGCTGCTGTTTGTGCTGCAGTGTCTGCACATCTTCTGGGCCGTACTCATCCTGCGTATGGCTATCAAATTTTTGCCAGGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013704-'10-9,'10-8,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0379811=TRAM_LAG1_CLN8=FE(21.6=100)
A:
PF0379811=TRAM_LAG1_CLN8=FE(18.0=100)
C2:
PF0379811=TRAM_LAG1_CLN8=PD(21.6=80.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGTGCACCATGTTGCCACC
R:
CATACGCAGGATGAGTACGGC
Band lengths:
244-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]