DreEX0021161 @ danRer10
Exon Skipping
Gene
ENSDARG00000069435 | cfap58
Description
cilia and flagella associated protein 58 [Source:ZFIN;Acc:ZDB-GENE-060929-128]
Coordinates
chr1:47220239-47257880:+
Coord C1 exon
chr1:47220239-47220379
Coord A exon
chr1:47226857-47227080
Coord C2 exon
chr1:47257769-47257880
Length
224 bp
Sequences
Splice sites
3' ss Seq
TGTATGTGTTTATCATCAAGGTG
3' ss Score
5.9
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCTGAGCTGCAGAAGATGAAGCTTCAGGCCCAAGAGACGAAGCAGCTGCTTGCGAAACAGCAGGCGCAGGAGCAGGAGCTGCTGAAGATCATAGCAGAGGCTGATGCTGAGAGAATTCGGCAGAAGAAAGAGCTGGATCAG
Seq A exon
GTGATAAGTGAGCGTGATCTCCTGGGGACACAGTTGGTGAAAAGAAATGATTCGCTGGCGCTACTGTATGAAAAGGTCAAAATCCAGCAGTCCATCTTGAACAAGGGCGAGGTGCACTACAACGAAAGATTGGAGGACATCAGAGTCCTGAAGATAGAGATCAAGAAGCAACGACGAGAAAAAAGCATCCTCAGCAAGACCGTAATAAACGTGGACGACCTCAG
Seq C2 exon
ACAGGAAGTGTTTCATATGCACAGGGAACTCATGAAAGAGAGGACAAGATGTCGGGCTCTAGAGGATGAGCTCAACAATCCCCTGAATGTTCACCGCTGGAGAAAACTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069435-'15-18,'15-17,16-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAAGATGAAGCTTCAGGC
R:
CGAGTTTTCTCCAGCGGTGAA
Band lengths:
244-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]