GgaEX6040924 @ galGal3
Exon Skipping
Gene
ENSGALG00000008417 | CCDC147
Description
NA
Coordinates
chr6:25756350-25758765:+
Coord C1 exon
chr6:25756350-25756490
Coord A exon
chr6:25756845-25757068
Coord C2 exon
chr6:25758654-25758765
Length
224 bp
Sequences
Splice sites
3' ss Seq
GCTTTGACCTGCATCCTTAGGTT
3' ss Score
8.19
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GCTGAGCTACTTAAGATGAAAAAACAAGCTCTGGAGACCAAGAACTTCATAGAAAATCAGGAGGCAGAAGAGAGAAAACTCCTAAAAATTATTGCTGAGGCTGATGCGGAGAGGCTGAAGCAGAATAAGGAATATGACCGG
Seq A exon
GTTATCAATGAGAGAGATGTCCTTGGGTCCCAGCTTGTTCGACGCAACGATGAGGTGGCTCTTCTCTATGAAAAGATCAAAATCCAGCAATCCATCTTAAACAAGGGTGAGACTCAGTACAGGCAGAGAATGGAAGACATCCGGCTTCTCAAGCTGGAGATCAGAAAACTTCGTCGTGAGAAGGGAATACTTGGTAAAACCGTGGCTAACGTAGAGGAACTCAG
Seq C2 exon
ACAGGAGGTTCATCACATGCGGAAGGAGCTATTAAGAGAACAGACTCGGTGCAAAGTTTTGGAAGAAGAACTGGAGAATCCCTTGAATGTTCACAGATGGAGAAAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008417-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF060057=DUF904=PU(63.0=61.3)
C2:
PF060057=DUF904=PD(35.6=68.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCTCTGGAGACCAAGAAC
R:
TCCAGTTTTCTCCATCTGTGAACA
Band lengths:
229-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]