MmuEX6033557 @ mm10
Exon Skipping
Gene
ENSMUSG00000046585 | Cfap58
Description
cilia and flagella associated protein 58 [Source:MGI Symbol;Acc:MGI:2685815]
Coordinates
chr19:47982019-47986552:+
Coord C1 exon
chr19:47982019-47982159
Coord A exon
chr19:47983448-47983671
Coord C2 exon
chr19:47986441-47986552
Length
224 bp
Sequences
Splice sites
3' ss Seq
AAGTGGCCATGCCTTTCTAGGTC
3' ss Score
7.27
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG
Seq A exon
GTCATCAGTGAGAGAGACATCCTGGGGTCTCAACTTGTCCGGCGAAACGATGAGTTAGCCTTGCTCTATGAGAAGATTAAGATCCAACAGTCAGTGCTGAACAAAGGCGAGACCCAGTACAACCAGCGGGTGGAGGACATGCGCATCCTCAAACTGGAGATCAAGAAGCTCCGAAGGGAGAAGGGGATCCTTGCCAGGAGTGTGGCCAATGTGGAGGAGCTCAG
Seq C2 exon
GCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046585-'6-15,'6-13,16-15=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGCTGAGACAACAAGCC
R:
TCAAGCTTTCTCCATCTGTGCA
Band lengths:
244-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types