MmuEX6033557 @ mm9
Exon Skipping
Gene
ENSMUSG00000046585 | Ccdc147
Description
coiled-coil domain containing 147 [Source:MGI Symbol;Acc:MGI:2685815]
Coordinates
chr19:48056509-48061042:+
Coord C1 exon
chr19:48056509-48056649
Coord A exon
chr19:48057938-48058161
Coord C2 exon
chr19:48060931-48061042
Length
224 bp
Sequences
Splice sites
3' ss Seq
AAGTGGCCATGCCTTTCTAGGTC
3' ss Score
7.27
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCCGAGCTACAGAAGCTGAGACAACAAGCCCTGGAGACCAAACACTTCATTGAAAAGCAGGAGGTAGAAGAGAGGAAACTCTTGCGCATCATTGCCGAGGCTGACGGCGAGAGGGTGAGGCAGAAGAAGGAGTTGGACCAG
Seq A exon
GTCATCAGTGAGAGAGACATCCTGGGGTCTCAACTTGTCCGGCGAAACGATGAGTTAGCCTTGCTCTATGAGAAGATTAAGATCCAACAGTCAGTGCTGAACAAAGGCGAGACCCAGTACAACCAGCGGGTGGAGGACATGCGCATCCTCAAACTGGAGATCAAGAAGCTCCGAAGGGAGAAGGGGATCCTTGCCAGGAGTGTGGCCAATGTGGAGGAGCTCAG
Seq C2 exon
GCAGGAGCTGTACCACATGCAAAGAGAATTCCTGAAGGAAAGGACGAGGTGCCGAGCCCTGGAGGAGGAGCTGGAGAACCCCATGAACGTGCACAGATGGAGAAAGCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000046585-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAGCTGAGACAACAAGCC
R:
TCAAGCTTTCTCCATCTGTGCA
Band lengths:
244-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: