DreEX0021831 @ danRer10
Exon Skipping
Gene
ENSDARG00000089781 | ciz1a
Description
cdkn1a interacting zinc finger protein 1a [Source:ZFIN;Acc:ZDB-GENE-100922-222]
Coordinates
chr5:1201144-1205405:-
Coord C1 exon
chr5:1205332-1205405
Coord A exon
chr5:1201820-1202011
Coord C2 exon
chr5:1201144-1201277
Length
192 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTTTGCTCAGCAGACT
3' ss Score
6.98
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
ATTCTCTACCAGAGGAAAGTGTTGTAAATGAACCACCGGCCACTGAAGCAGAAGAACAGTGTCAAGCGGACAAG
Seq A exon
ACTGATGCTGCAGATGTGGATCAGCCGATCAGTGGAGCTCCAGCAGATGCCGGCAGCTCTGATTCAGTGTCTGCAGTAAAGCAGCCGGAAGCGGCTCCAGTCCAGCACCAGCTCACAGACACGGCGGCAGCAGCAGAATCCTCCAGCAGCTTCTTCTGCTATATCTGCAACATCACCTGCCATAACCAGCAG
Seq C2 exon
AATTTCCAGAGCCATATGAACGGACTGACGCACCAGCAGAAGATGATGGAGATCCAGCACATGAGTAACGCCTGTCTGGTCACATTACTGCCGCGCGTCCAGGAGTCACTGCAGGGAGCAGCTCGCAAAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089781-'13-17,'13-16,15-17
Average complexity
S
Mappability confidence:
89%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.660 C2=0.478
Domain overlap (PFAM):
C1:
PF0238313=Syja_N=FE(13.6=100)
A:
PF128742=zf-met=PU(52.0=20.3)
C2:
PF0238313=Syja_N=FE(25.4=100),PF128742=zf-met=PD(44.0=23.9),PF049887=AKAP95=FE(56.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTACCAGAGGAAAGTGTTGT
R:
GTCTTTGCGAGCTGCTCCC
Band lengths:
204-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]