RnoEX6016448 @ rn6
Exon Skipping
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11401013-11403689:+
Coord C1 exon
chr3:11401013-11401134
Coord A exon
chr3:11402020-11402217
Coord C2 exon
chr3:11403565-11403689
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGTCTCTGCGTCTGCTGTAGATG
3' ss Score
9.69
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
ACCCAGAGGAGACCTTGCCAGAACCAGTAAGTGCCCAGAGCAGTGAAGACAGGAGCCAAGAGCCGTCAGCTGGTGGCCTGGATGTGGGAGAATGTGAAAAGAGAGCAGGAGAAGTGCTGGGG
Seq A exon
ATGTGGGGGGCTGGGAGCTCCCTGAAGGTCACCATCCTGCAGAGTAGCAACAGCCGGGCTTTCAACACCACACCCCTCACATCTGGACCTCGCCCTGGGGACTCCGCCTCTGCCACCCCTGCCCTTGCCAGCACACCCTCCAAGCAAAGCCTCCAGTTCTTCTGCTACATCTGCAAGGCCAGCTGCAGCAGCCAGCAG
Seq C2 exon
GAGTTTCAGGATCACATGTCAGAGGCTCAGCACCAACAGCGGCTTGGGGAAATGCAGCACTCGAGCCAGACCTGCCTGTTGTCCCTGCTGCCCATGCCTCGGGACATCCTGGAGAGAGAAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442-'14-23,'14-20,16-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.951 A=0.515 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
PF127562=zf-C2H2_2=PU(50.0=40.9)
C2:
PF127562=zf-C2H2_2=PD(46.3=59.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGAGGAGACCTTGCC
R:
TTCTCTCTCCAGGATGTCCCG
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]