DreEX6014150 @ danRer10
Exon Skipping
Gene
ENSDARG00000089461 | ciz1b
Description
cdkn1a interacting zinc finger protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2933]
Coordinates
chr5:62976812-62978158:-
Coord C1 exon
chr5:62978097-62978158
Coord A exon
chr5:62977216-62977395
Coord C2 exon
chr5:62976812-62976936
Length
180 bp
Sequences
Splice sites
3' ss Seq
AAGAGCTTTGTGTCTTTCAGGTG
3' ss Score
8.88
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
AGGATGATAATGGGAATGCACAGCTTGAAGAAGACATTGAAGATCAGAGCAGAGCAGCAGAG
Seq A exon
GTGCAGGGTGTTGGGACGTCCCTGAAGGTGACCATCCAGCGCAGCAGTGAGAGTCGAGCCTTCAGCACTTCACCTGAGGAGACGGCAGCCGGTGCGGGCCATGATGGAGAGAAAGACAGAAGCAAACACACTGTCAAATTCACCTGCCACATTTGCAACCTAAGCTGTCCTGACATGCAA
Seq C2 exon
GGCTTCCAGACTCACATGATCAGTTCTGATCATCAAAAGCGTATGATGGAAATCCAGCATGTGAGTAACATCCGTCTGGCCACACCGGTACCTCAGACCCAGCAGTCCTTGCAGGGCACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089461-'5-6,'5-4,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.683 C2=0.952
Domain overlap (PFAM):
C1:
NO
A:
PF127562=zf-C2H2_2=PU(48.0=40.0),PF064679=zf-FCS=PU(55.9=31.7)
C2:
PF127562=zf-C2H2_2=PD(48.0=57.1),PF064679=zf-FCS=PD(38.2=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGATAATGGGAATGCACAGC
R:
CTGTGTGTGCCCTGCAAGG
Band lengths:
186-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]