BtaEX6046346 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012274 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr11:98812699-98814749:-
Coord C1 exon
chr11:98814628-98814749
Coord A exon
chr11:98813573-98813770
Coord C2 exon
chr11:98812699-98812823
Length
198 bp
Sequences
Splice sites
3' ss Seq
TGCTCCTGCTCCCCGTGCAGGTG
3' ss Score
10.97
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GCCCAGAGGAGGCCCCACCAGAGCCAGGGGGCGCCCAGGCCAGCATGGAGGAGAGCCAGGAGGAGCTGACCGGTGGCCTGGATGTGGCAGAATGTGAAAAAAGAGCGAGAGAGATGCTGGGG
Seq A exon
GTGTGGGGGGCTGGGGGATCCCTGAAGGTCACCATCCTGCAGAGCAGCGACAGCCGGGCCTTTAGCACCGTACCCCTCACACCCGGTCCCCGGGCCAGCGACTCTACCTCTGCCACCCCTGCGGCGGCCAGCACACCCTCTAAGCAGGCCCTTCAGTTCTTCTGCTACATCTGCAAGGCCGGCTGCAGTAGCCAGCAG
Seq C2 exon
GAGTTCCAGGAACACATGTCGGGAGCCCAGCACCAGCAGCGGCTCGGTGAGATCCAGCACATGAGCCAAGCCTTCCTGCTGTCCCTGCTGCCTGTGCCCCGGGACGTCCTGGAGAGAGAGGACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012274-'12-21,'12-19,13-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.805 A=0.394 C2=0.476
Domain overlap (PFAM):
C1:
NO
A:
PF121713=zf-C2H2_jaz=PU(51.9=21.2)
C2:
PF121713=zf-C2H2_jaz=PD(40.7=26.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGCCCCACCAGAG
R:
TCGTCCTCTCTCTCCAGGA
Band lengths:
242-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]