HsaEX6063177 @ hg19
Exon Skipping
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:16744]
Coordinates
chr9:130938630-130940769:-
Coord C1 exon
chr9:130940648-130940769
Coord A exon
chr9:130939845-130940042
Coord C2 exon
chr9:130938630-130938754
Length
198 bp
Sequences
Splice sites
3' ss Seq
AGTTCCTACTCCCCATGCAGGTA
3' ss Score
8.55
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCATGGAAAAGACCTTGCCAGAGCCTGTGGGCACCCAAGTCAGCATGGAAGAGATTCAGAATGAGTCGGCCTGTGGCCTAGATGTGGGAGAATGTGAAAACAGAGCGAGAGAGATGCCAGGG
Seq A exon
GTATGGGGCGCCGGGGGCTCCCTGAAGGTCACCATTCTGCAGAGCAGTGACAGCCGGGCCTTTAGCACTGTACCCCTGACACCTGTCCCCCGCCCCAGTGACTCCGTCTCCTCCACCCCTGCGGCTACCAGCACTCCCTCTAAGCAGGCCCTCCAGTTCTTCTGCTACATCTGCAAGGCCAGCTGCTCCAGCCAGCAG
Seq C2 exon
GAGTTCCAGGACCACATGTCGGAGCCTCAGCACCAGCAGCGGCTAGGGGAGATCCAGCACATGAGCCAAGCCTGCCTCCTGTCCCTGCTGCCCGTGCCCCGGGACGTCCTGGAGACAGAGGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337-'33-32,'33-30,36-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=0.409 C2=0.479
Domain overlap (PFAM):
C1:
NO
A:
PF127562=zf-C2H2_2=PU(55.9=50.0)
C2:
PF127562=zf-C2H2_2=PD(40.7=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAAGACCTTGCCAGAGC
R:
TCATCCTCTGTCTCCAGGAC
Band lengths:
244-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)