GgaEX0027590 @ galGal3
Exon Skipping
Gene
ENSGALG00000004789 | CIZ1
Description
NA
Coordinates
chr17:5716826-5718609:+
Coord C1 exon
chr17:5716826-5716905
Coord A exon
chr17:5717960-5718142
Coord C2 exon
chr17:5718479-5718609
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCAACTCTTTCTTTTGGCAGGTG
3' ss Score
9.45
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GTACAAATAATGTAAAGCAGTACGCAGCTGAAAGTCTCTCTAAAGAGAGGAAATTCTCTGAGGAACCAAAGGCTCCTGAG
Seq A exon
GTGTTGAGCTCTGGAGGTTCACTGAAAGTGACTATCCAGCAGAGCAGTGAGAGCAGAGCTATCAGTACAACAGCTCTGAAACCAGGGCAGTGGACCTGCGAGATGGGCACAGCTGATGCCAGCCCTGAATCAGCCCTTAAATTCTACTGTTATATCTGCAAGACCAACTGCTGCAATCAGCAG
Seq C2 exon
AATTTCCAAGCCCACATGGCTGGAATTCAGCACCAGCAGCGACTTGGGGAGATTCAGCACATGAGCAATGTTTGTTTTGTTTCACTACTGCCTATGGTGAAGGAGCAGAAGTTGCTGGCAGAGAAAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004789_MULTIEX1-6/13=5-7
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.111 C2=0.062
Domain overlap (PFAM):
C1:
NA
A:
PF128742=zf-met=PU(52.0=48.1)
C2:
PF128742=zf-met=PD(40.0=22.7),PF049887=AKAP95=FE(45.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAAATAATGTAAAGCAGTACGCA
R:
CCATCTTTCTCTGCCAGCAACT
Band lengths:
211-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]