DreEX0022125 @ danRer10
Exon Skipping
Gene
ENSDARG00000059596 | clip2
Description
CAP-GLY domain containing linker protein 2 [Source:ZFIN;Acc:ZDB-GENE-100727-3]
Coordinates
chr5:58727833-58750753:+
Coord C1 exon
chr5:58727833-58728125
Coord A exon
chr5:58728740-58728958
Coord C2 exon
chr5:58750239-58750753
Length
219 bp
Sequences
Splice sites
3' ss Seq
TTATGCTTGTTTGTCTTCAGTCC
3' ss Score
8.55
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CTGGCACACATTCAGGGCATTTACCTAAAAGAGCTTTCCTAAATATGTGCCTCTGCCTGTGAGCCTTGCATCCTGTCCCACTCCCGCCGCCAGCTTTAGCTCAGCATCCATATTTTTCGCATCCGTGTGGGAGAGAGAGAGGGAGTGAGTGAGAAAGAGAGCGAGAGTGAAGGGAGTGGCAGACGCTGACAAATCTCATGCCGGGAAGCCGACAGAGCCATCCCTACACACACACCATCTGAAGTTCGCCGGCAAAGACTTATTTATACCACACCGGATTTGGACTTCATAAG
Seq A exon
TCCTGCAGGTAGAATGGAGAGGGATATCCGCCATCCTCATATTTAGTGCCTCAGTGTAAACCCTTAATAAGCTACGGAAACTTGAAGTTTCACCAGTGGACATAATGAACATGCTAAAGTCCAGTGGCTTGAAGATCCCTGGCAGGGGTCCCAAACACGCCAGTCCAGTAGGACGAACAACCGCTGGCCCCTCAACCAGTCCTGCGACTCAAAAAGAAG
Seq C2 exon
GTTGCCCCTACAAGCAGACGACTCCCACCCCAAGCAGCAATGCCTCAGACAAGTCCAGCTCCAAAGCCTCTGAGGTTGGCGACGAGGTGGCCGGCGACTTTGTAGTCGGTGAACGTGTCTGGGTGAACGGAGTCAAGCCGGGAGTCATTGCCTACCTTGGAGAGACCCAGTTTTCCCCGGGACAGTGGGCGGGAGTGGTGCTGAATGATCTGGTTGGAAAAAACGATGGCTCTGTCAATGGCGTGCGCTACTTCGAGTGCCAGGCTTTGCAGGGCATCTTCACGAGGCCTTCTAAGCTCACACGCCAACCCATTGGAGACGGGAGCGATGAGCAGCAGAACGCACAGCTCCAAGGTGGAGCAGGAGCTTCCGGACAGCGCGTGGTCATGCCGCTCAGAGAAGGCATGCTTAACAGCTCTGTCAAAACCGGCAACGAGTCCGGATCCAACATGTCTGACAGTGGATCGGTGAAGAAAGGTGGAGAGAAGGACCTAAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059596-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.923 C2=0.465
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0130220=CAP_GLY=WD(100=38.4),PF0130220=CAP_GLY=PU(7.6=2.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCGAGAGTGAAGGGAGT
R:
GGGTCTCTCCAAGGTAGGCAA
Band lengths:
305-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]