MmuEX0011701 @ mm9
Exon Skipping
Gene
ENSMUSG00000063146 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:MGI Symbol;Acc:MGI:1313136]
Coordinates
chr5:134998456-135028304:-
Coord C1 exon
chr5:135027916-135028304
Coord A exon
chr5:135010917-135011107
Coord C2 exon
chr5:134998456-134999012
Length
191 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTGTTCTGCCCGCAGGTG
3' ss Score
13.4
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
TTTGTTCGCTCTCTGGCCGCTGAGCTCTCCTGGCGCTCGGCTTCTCTCGGCTGGGCTCGGCTCACCTTGGCAGGGCTCCACCGGGCTCCGCTCTGCTCGGTTTCTCTCGCCTCCGCCCCGTTTGGCTCGGATCTTCCCGGCTCGGCCCCGCTCGGCTCGACTCAGCTCGGCTCCGCCTCGGGGCGCGCAGGCAGCGGCCGGGCTTACTGGATCGGCCCCTCCCTCTATCCCCTTCTGGACGTAGATCCTGTGCGAGGCCCGGACTCCGAGCGCGGAGACCCGGTTAGTGTATCGGCGTGAGGAGACCGGCGCAGCATCCTCGTTCCCGGGACGCGCGGACCAAGAGGAGGCGAGGGGTGTCGGGTCCTGGTCGCTGCTGGAGCTCCAAG
Seq A exon
GTGACCGAGGATGGCAGAGAGGATGTGACCATTGTCTGCCTTGGTCTGCCCTTCTAGTGGCACCGCCATGCAGAAGCCCAGTGGCCTGAAGCCCCCTGGCCGAGGGGGGAAGCACTCCAGCCCCGTGGGCAGGCCGTCCGTTGGGTCTGCTTCATCTTCCGTGGTGGCCTCGACCAGTGGCTCCAAAGAAG
Seq C2 exon
GGTCTCCCCTGCACAAACAGGCATCGGGCCCCTCCTCGTCTGGAGCCGCCACCACCGTCTCTGAGAAGCCAGGTCCAAAGGCGGCTGAAGTGGGTGATGACTTCCTGGGAGACTTTGTGGTGGGCGAGAGGGTGTGGGTGAATGGCGTGAAGCCAGGCGTGGTGCAGTACCTGGGTGAGACACAGTTTGCGCCAGGCCAGTGGGCCGGCGTGGTCTTGGACGACCCGGTGGGCAAGAACGATGGAGCTGTGGGTGGCGTGCGCTACTTCGAGTGCCCGGCTCTACAGGGCATCTTCACGCGGCCCTCCAAGCTGACCCGCCAGCCCACCGCTGAGGGCTCGGGCAGTGATACGCACTCGGTGGAATCCCTCACGGCCCAGAACCTGTCCCTGCATTCTGGCACGGCCACGCCCCCACTCACAGGCCGAGTCATCCCCCTGCGGGAGAGTGTTCTTAACAGCTCAGTGAAGACGGGCAATGAGTCTGGTTCCAACCTCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063146-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.543
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0130220=CAP_GLY=WD(100=35.5),PF0130220=CAP_GLY=PU(7.6=2.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCTATCCCCTTCTGGACG
R:
TGGACCTGGCTTCTCAGAGAC
Band lengths:
246-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: