RnoEX0021808 @ rn6
Exon Skipping
Gene
ENSRNOG00000021611 | Clip2
Description
CAP-GLY domain containing linker protein 2 [Source:RGD Symbol;Acc:62019]
Coordinates
chr12:25173005-25202927:+
Coord C1 exon
chr12:25173005-25173352
Coord A exon
chr12:25191016-25191206
Coord C2 exon
chr12:25202371-25202927
Length
191 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTGTTCTGCCTGCAGGTG
3' ss Score
12.41
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
CTCGGCATCTCTCGGCTGGGCTCGGCTCACCTTGGCAGGGCTCCACGGGGCTCCGCTCTGCTCGGCTTCTCTCGCCTCCGCCCCGTTGGGCTCGGATCTTCCCGACTCAGCCCCGCTCGGCTCGGCTCCGCCTCGGGGCGCGCAAGCAGCGGCCGAGCTTACAGAATCGGCCCCTCCCTCTATCCCTTCTGGCCGTAGAGCCTGTCCGAGGCCCGGACTCAGAACGCGGAGAACGGGTTAGGGTAGCGGCCGGGCGTGAGGGGACCGGCACAGCATCCTTGTTCCCAGGACGCGCGGACCAAGAGGAAGCGAGGGGTGTCGGGTCCTGTTCGCTGCTGGAGCTCCAAG
Seq A exon
GTGACCAAGGATGGCAGAGAGGATATGACCGGCGGCTGCCGTCGTCTGCCCTCCTAGTGGCATCACCATGCAGAAGCCCAGTGGCCTGAAGCCCCCTGGCCGAGGGGGGAAGCACTCCAGTCCCGTGGGTAGGCCCTCCATCGGGTCTGCCTCATCTTCTGTGGTGGCATCGGCGAGCGGCTCCAAAGAAG
Seq C2 exon
GGTCTCCCCTGCACAAGCAGGCGTCGGGCCCCTCCTCGGCTGGAGCCACCACTACTGTCTCCGAGAAGCCAGGTCCAAAGGCAGCCGAAGTGGGTGATGACTTCTTGGGAGACTTCGTGGTGGGCGAGAGGGTGTGGGTGAATGGCGTGAAGCCCGGCGTGGTGCAGTACCTGGGTGAGACACAGTTTGCGCCAGGCCAGTGGGCCGGCGTGGTCTTGGATGATCCTGTGGGCAAGAACGATGGAGCTGTGGGTGGCGTGCGCTACTTCGAGTGCCCAGCTCTACAGGGCATCTTCACACGGCCCTCCAAGCTGACCCGCCAGCCCGCAGCTGAGGGCTCCGGCAGTGACGCCCACTCAGTGGAATCCCTCACCGCCCAGAACCTGTCCCTGCATTCTGGCACGGCCACGCCCCCACTCACCGGCCGAGTCATCCCCCTGCGGGAGAGTGTTCTCAACAGCTCCGTGAAGACGGGCAATGAGTCTGGCTCCAACCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021611_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.532
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0130220=CAP_GLY=WD(100=35.5),PF0130220=CAP_GLY=PU(7.6=2.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTCTATCCCTTCTGGCC
R:
CCTGGCTTCTCGGAGACAGTA
Band lengths:
248-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]