HsaEX0015673 @ hg19
Exon Skipping
Gene
ENSG00000106665 | CLIP2
Description
CAP-GLY domain containing linker protein 2 [Source:HGNC Symbol;Acc:2586]
Coordinates
chr7:73703805-73753334:+
Coord C1 exon
chr7:73703805-73704064
Coord A exon
chr7:73731810-73731997
Coord C2 exon
chr7:73752778-73753334
Length
188 bp
Sequences
Splice sites
3' ss Seq
TCTCCTGTCTCTGCCCGCAGGTG
3' ss Score
14.79
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
CGGCTCGGCCGCGGGGCGCGCAGGCGGCTGCTGGGCGGCCTCGGTGCGCGCCTCCCGCCTTCCCAGAGACGTGGCGCGAGGCCCGGGCCCTGAGCACCTATCGCGGGGATCCCCGGCGCCAGGAGGGGGTGCAGCCGGTGGGCAGCGCCGCGCAGGGAGGGGCCGCAGCATCCTCGCCCCCCAGCGCGCCCGGGCCCGAGAGGAGGAGGCCGGGGCTCTCCGGGCCTCCCGCCGCTTAGCCTGATGCTGGAAGGACGAAG
Seq A exon
GTGAGTGAAGATGGCAGAGAGGACGTGACCAGCACTCACCCTTGTCCACCTGCCCAGTGGCACCGCCATGCAGAAGCCCAGCGGCCTGAAGCCCCCCGGCCGTGGGGGGAAGCACTCCAGCCCCATGGGCCGGACATCTACTGGGTCAGCTTCATCCTCGGCGGCGGTGGCCGCTAGCTCCAAGGAAG
Seq C2 exon
GCTCCCCACTGCACAAACAGTCATCTGGACCCTCCTCCTCCCCGGCCGCAGCTGCTGCCCCCGAGAAGCCGGGCCCCAAGGCGGCGGAAGTGGGGGATGACTTCCTGGGGGACTTTGTGGTGGGCGAGCGGGTGTGGGTGAACGGCGTGAAGCCAGGCGTGGTGCAGTATCTGGGAGAGACGCAGTTCGCACCGGGCCAGTGGGCTGGCGTGGTGCTGGACGACCCGGTGGGCAAGAATGATGGCGCGGTGGGCGGCGTGCGCTACTTCGAGTGCCCGGCCCTCCAGGGTATCTTCACGCGGCCCTCCAAGCTGACCCGGCAGCCCACGGCCGAGGGCTCGGGGAGTGATGCCCACTCCGTGGAGTCGCTGACTGCCCAGAACCTGTCATTGCATTCGGGCACGGCCACGCCCCCGCTGACCAGCCGCGTCATCCCCCTGCGGGAGAGCGTCCTCAACAGCTCCGTGAAGACTGGCAACGAGTCGGGATCCAACCTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106665-'0-7,'0-4,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.548
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0130220=CAP_GLY=WD(100=35.5),PF0130220=CAP_GLY=PU(7.6=2.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCGCCTTCCCAGAGAC
R:
GAGGAGGAGGGTCCAGATGAC
Band lengths:
249-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)