DreEX0022612 @ danRer10
Exon Skipping
Gene
ENSDARG00000033345 | cntln
Description
centlein, centrosomal protein [Source:ZFIN;Acc:ZDB-GENE-090313-409]
Coordinates
chr1:26306189-26314055:-
Coord C1 exon
chr1:26313971-26314055
Coord A exon
chr1:26306979-26307113
Coord C2 exon
chr1:26306189-26306338
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGGCTCTTTAAACAGAAA
3' ss Score
7.66
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
AGAGAAGCAGAAGGCTGAGAACAAGGACAGAAAAGTTCTGGAGATCCTTCAAGCAAAAGACTACAGGATCCAAGAGCTGGAGCAG
Seq A exon
AAAGTGACGGCAGAAGAGCAGGAGATAAACAAGCGAGTCCAGCAGTTGCGTGGCAGTGAAGAGGAGTGCACTCTAATGAAGAAAGAACTGGCAGCTCTGCAGCACAGACTGGGGAATAAGAGTCGACAACTTAAG
Seq C2 exon
GAAGCGAGGAGGCAAGCGCAGGAGTGTGAGGAGGAGGGCAGGCGTGCCCTACAGGAAGCCAGGCAACAATTAGATGCTCAGCACTCGGCCTCTCAGGCAGAGCTGGAGAGATTGCGGGACCAAGAGGCCGTCAGCAGTTCCAGAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033345-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=0.244 C2=0.740
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGGCTGAGAACAAGGA
R:
TTGACTCTGGAACTGCTGACG
Band lengths:
228-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]