RnoEX6022276 @ rn6
Exon Skipping
Gene
ENSRNOG00000006721 | AABR07049064.1
Description
NA
Coordinates
chr5:103078978-103090550:+
Coord C1 exon
chr5:103078978-103079062
Coord A exon
chr5:103089622-103089756
Coord C2 exon
chr5:103090347-103090550
Length
135 bp
Sequences
Splice sites
3' ss Seq
CAGTTTAATCTCTTCCGTAGACT
3' ss Score
7.28
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AGAAAAACAGAAATCTGAAGCCAAAGACAGAAAAGTTCTGGAAATTTTACAAGTCAAAGATGCGAAAATACAAGAATTGGAGCAG
Seq A exon
ACTGAAGCAGTACTAAACCGGGAGCTATATGACCTTGTAAAGCTGAAGACGCTGGTTGATGAAGAAAATGCTTTCTTGAAGAAAGAATTCAGTGATTTACAGAAGAAATTTAAAGATAAAAGCCAAGAAGCTAAG
Seq C2 exon
GACGCCAAGGAGTGTGTACAGAGTAAAGAAGAGCAAAACAGATTGCTTATAAAAAACCTGGAGGAGGAAAACGAGAGGGTCCGTGCACGCTGCACTGACCTGCTAAATGACCTGGAGAAACTGAGGATGCAGGAGGCACACTGGAGGGAAGAAAAGCACAGTGCGGATGCGAAAGTAAAGGTACAGGAAGGAACCGAGTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006721-'6-7,'6-6,8-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.382
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000058536fB130
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAATCTGAAGCCAAAGACAGA
R:
TACTTTCGCATCCGCACTGTG
Band lengths:
256-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]