RnoEX0002878 @ rn6
Exon Skipping
Gene
ENSRNOG00000006721 | AABR07049064.1
Description
NA
Coordinates
chr5:103028928-103089756:+
Coord C1 exon
chr5:103028928-103029016
Coord A exon
chr5:103078978-103079062
Coord C2 exon
chr5:103089622-103089756
Length
85 bp
Sequences
Splice sites
3' ss Seq
ACTCTTTCTTTTGTTTCTAGAGA
3' ss Score
9.02
5' ss Seq
CAGGTTGTA
5' ss Score
-0.53
Exon sequences
Seq C1 exon
GCTGACAAAGAATTCGTATGGTCTCTGTGGAAACGTCTTCAGGCAACAAACCCAGATCTCACTCAAACTGTCAGTTTGGTTGTGGAAAG
Seq A exon
AGAAAAACAGAAATCTGAAGCCAAAGACAGAAAAGTTCTGGAAATTTTACAAGTCAAAGATGCGAAAATACAAGAATTGGAGCAG
Seq C2 exon
ACTGAAGCAGTACTAAACCGGGAGCTATATGACCTTGTAAAGCTGAAGACGCTGGTTGATGAAGAAAATGCTTTCTTGAAGAAAGAATTCAGTGATTTACAGAAGAAATTTAAAGATAAAAGCCAAGAAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006721-'2-6,'2-4,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000058536fB129
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGACAAAGAATTCGTATGGTCT
R:
GCATTTTCTTCATCAACCAGCGT
Band lengths:
160-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]