DreEX0022611 @ danRer10
Exon Skipping
Gene
ENSDARG00000033345 | cntln
Description
centlein, centrosomal protein [Source:ZFIN;Acc:ZDB-GENE-090313-409]
Coordinates
chr1:26306979-26317191:-
Coord C1 exon
chr1:26317103-26317191
Coord A exon
chr1:26313971-26314055
Coord C2 exon
chr1:26306979-26307113
Length
85 bp
Sequences
Splice sites
3' ss Seq
TTCAATCTGTGCTGTACTAGAGA
3' ss Score
4.93
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCAGACAAGGAGTTTGTGTGGTCACTTTGGAAGCGGCTTCAGGTGGCCAGTCCTGATCTCACCCAGGCTGTGAGTCTTGCTGTGGAAAG
Seq A exon
AGAGAAGCAGAAGGCTGAGAACAAGGACAGAAAAGTTCTGGAGATCCTTCAAGCAAAAGACTACAGGATCCAAGAGCTGGAGCAG
Seq C2 exon
AAAGTGACGGCAGAAGAGCAGGAGATAAACAAGCGAGTCCAGCAGTTGCGTGGCAGTGAAGAGGAGTGCACTCTAATGAAGAAAGAACTGGCAGCTCTGCAGCACAGACTGGGGAATAAGAGTCGACAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033345-'3-5,'3-3,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.099 C2=0.244
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGCCAGTCCTGATCTC
R:
TATTCCCCAGTCTGTGCTGCA
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]