HsaEX6060779 @ hg19
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein, centrosomal protein [Source:HGNC Symbol;Acc:23432]
Coordinates
chr9:17143286-17235790:+
Coord C1 exon
chr9:17143286-17143374
Coord A exon
chr9:17226201-17226285
Coord C2 exon
chr9:17235656-17235790
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCTCTATATTTTATATCTAGAGA
3' ss Score
6.08
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GCTGATAAAGAATTTGTATGGTCTTTGTGGAAACGTCTCCAGGTTACAAACCCAGATCTCACACAAGTGGTCAGTTTGGTTGTGGAAAG
Seq A exon
AGAAAAACAGAAATCTGAAGCTAAAGACAGAAAAGTTCTAGAAATTCTGCAAGTCAAGGATGCCAAAATACAAGAATTTGAACAG
Seq C2 exon
AGAGAGTCAGTACTGAAACAGGAAATAAATGACCTTGTAAAACGGAAAATTGCAGTAGATGAAGAAAATGCTTTCTTAAGGAAAGAATTCAGTGACTTGGAGAAGAAATTTAAAGATAAAAGTCAAGAAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459-'1-5,'1-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF061568=DUF972=PU(16.2=41.4),PF0116613=TSC22=PU(2.1=3.4)
C2:
PF061568=DUF972=FE(59.5=100),PF0116613=TSC22=FE(93.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGAAACGTCTCCAGGTT
R:
TCTCCAAGTCACTGAATTCTTTCCT
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)