HsaEX6060779 @ hg38
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein [Source:HGNC Symbol;Acc:HGNC:23432]
Coordinates
chr9:17143288-17298352:+
Coord C1 exon
chr9:17143288-17143376
Coord A exon
chr9:17226203-17226287
Coord C2 exon
chr9:17298190-17298352
Length
85 bp
Sequences
Splice sites
3' ss Seq
TCTCTATATTTTATATCTAGAGA
3' ss Score
6.08
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GCTGATAAAGAATTTGTATGGTCTTTGTGGAAACGTCTCCAGGTTACAAACCCAGATCTCACACAAGTGGTCAGTTTGGTTGTGGAAAG
Seq A exon
AGAAAAACAGAAATCTGAAGCTAAAGACAGAAAAGTTCTAGAAATTCTGCAAGTCAAGGATGCCAAAATACAAGAATTTGAACAG
Seq C2 exon
GAAGGAACTGCAGGAGCTGCAGAATCTTTACAAACAGAACAGTACACATACAGCCCAGCAAGCAGAGCTGATCCAGCAGCTTCAGGTTCTCAATATGGACACACAAAAAGTACTGAGAAATCAGGAAGATGTTCACACAGCTGAAAGTATATCATATCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459_MULTIEX2-2/8=C1-6
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=0.000 C2=0.173
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTCAGTTTGGTTGTGGA
R:
CAGCTGTGTGAACATCTTCCTGA
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains