MmuEX0011976 @ mm9
Exon Skipping
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:84534547-84602314:+
Coord C1 exon
chr4:84534547-84534635
Coord A exon
chr4:84593462-84593546
Coord C2 exon
chr4:84602180-84602314
Length
85 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTGTTTGTTTCTAGAGA
3' ss Score
8.22
5' ss Seq
CAGGTTGTA
5' ss Score
-0.53
Exon sequences
Seq C1 exon
GCTGACAAGGAATTTGTATGGTCTCTGTGGAGGCGTCTTCAGGCAACAAACCCAGATCTCACTCAAACTGTCAGTTTGGTTGTGGAAAG
Seq A exon
AGAAAAACAGAAATCTGAAGCCAAAGACAGAAAAGTTCTGGAAATTTTACAAGTCAAAGATTCTAAAATACAAGAATTGGAGCAG
Seq C2 exon
ACTGAATCTGTACTAAAACAGGAACTACATGACCTTGTAAAACTGAAGACTCTGGTTGATGAAGAAAATGCTTTCTTGAGGAAAGAATTATGTGATTTACAGAAGAAATTTAAAGATAAAAGCCAAGAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.133 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGAATTTGTATGGTCTCTGTGGA
R:
GAAAGCATTTTCTTCATCAACCAGA
Band lengths:
159-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types