HsaEX0016092 @ hg38
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein [Source:HGNC Symbol;Acc:HGNC:23432]
Coordinates
chr9:17226203-17273866:+
Coord C1 exon
chr9:17226203-17226287
Coord A exon
chr9:17235658-17235792
Coord C2 exon
chr9:17273733-17273866
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATTTAAATTTTTTTCCACAGAGA
3' ss Score
9.68
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
AGAAAAACAGAAATCTGAAGCTAAAGACAGAAAAGTTCTAGAAATTCTGCAAGTCAAGGATGCCAAAATACAAGAATTTGAACAG
Seq A exon
AGAGAGTCAGTACTGAAACAGGAAATAAATGACCTTGTAAAACGGAAAATTGCAGTAGATGAAGAAAATGCTTTCTTAAGGAAAGAATTCAGTGACTTGGAGAAGAAATTTAAAGATAAAAGTCAAGAAATTAAG
Seq C2 exon
ACCTTTGAAGACAATTTAATTGAAGCAAGGAAAGAAGTTGAAGTATCACAGAGTAAATACAATGCTCTATCATTACAGTTGAGTAATAAACAGACTGAACTTATCCAGAAGGATATGGATATTACCCTGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459_MULTIEX2-3/8=2-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAATCTGAAGCTAAAGACAGA
R:
TGACCAGGGTAATATCCATATCCT
Band lengths:
212-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development