DreEX0022830 @ danRer10
Exon Skipping
Gene
ENSDARG00000009014 | col11a1b
Description
collagen, type XI, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-070912-607]
Coordinates
chr2:15775682-15778966:-
Coord C1 exon
chr2:15778859-15778966
Coord A exon
chr2:15778606-15778695
Coord C2 exon
chr2:15775682-15775735
Length
90 bp
Sequences
Splice sites
3' ss Seq
CATCGTGTCTTTCCTTGAAGGGT
3' ss Score
8.95
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
Exon sequences
Seq C1 exon
GGCTCTACGGGAGAAACTGGTCCTGTTGGAGAAAGAGGGCATCCTGGATCCCCAGGACCCCCTGGAGAGCAAGGCCTTCCTGGAGCTGCTGGCAAAGAAGGTGGAAAG
Seq A exon
GGTGATCCAGGTCCTCAGGGAATTTCTGGGAAACCTGGCCCTGCTGGATTGAAAGGGTTTCCAGGACAAAGGGGGCTTCCTGGCGCAGCG
Seq C2 exon
GGTCTGTCAGGTCTGAAGGGAGGCGAGGGTCCACAGGGTCCACAAGGCCCTAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009014-'43-43,'43-42,44-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(21.2=47.2)
A:
PF0139113=Collagen=FE(36.2=100)
C2:
PF0139113=Collagen=FE(21.2=100),PF0139113=Collagen=PU(20.2=94.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTACGGGAGAAACTGGT
R:
CTTGTGGACCCTGTGGACCC
Band lengths:
154-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]